Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0374
         (611 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                     129   2e-30
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                     123   1e-28
SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                     119   2e-27
SB_39665| Best HMM Match : Pox_A32 (HMM E-Value=0.023)                 36   0.034
SB_5898| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.034
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)        32   0.32 
SB_48675| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_47578| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_30045| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)        27   9.1  

>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score =  129 bits (311), Expect = 2e-30
 Identities = 64/198 (32%), Positives = 115/198 (58%), Gaps = 4/198 (2%)
 Frame = +1

Query: 28  IDFSKNTVAAK-SINDWVEENTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKIDER 204
           +D+ KN+  A+ ++N WVE+ T ++IK+L+     +  T   LVNA+YFKG+W    +  
Sbjct: 120 VDYVKNSNGARDTVNRWVEQKTKDKIKNLIPEGMFNKDTILCLVNAVYFKGSWMKHFNRN 179

Query: 205 LTSDRDFYVSKDKTIKVPMMYKRGDYKYGESAALNAQLIEIPYKGDQSSLIVVLPKDKDG 384
            T    F  +  + I+V  MY+  +++Y ES+ L  Q++E+PY G++ S++V+LP + DG
Sbjct: 180 ATQSGKFKTTPSQEIQVQFMYQSSEFRYLESSTLGCQIVELPYAGEKLSMVVLLPNEVDG 239

Query: 385 ITQLQEALKDPKTLETAQQSM---YSTEVDLYLPKFKIETETNLKDVLSNMNVNKIFNND 555
           + +L+ +L + +TL+ A  S+   +  EV++ LPKF +  E +L + L  M  + +F+  
Sbjct: 240 LGKLESSL-NKETLQEAMTSLRNSHPEEVEVTLPKFTLTQEFSLGETLKGMGASDLFSPG 298

Query: 556 AQITRLLKGESLSVSEAI 609
                 +    L VSE +
Sbjct: 299 KADLSGISAAPLVVSEVV 316


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score =  123 bits (296), Expect = 1e-28
 Identities = 61/199 (30%), Positives = 119/199 (59%), Gaps = 4/199 (2%)
 Frame = +1

Query: 25  RIDF-SKNTVAAKSINDWVEENTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKIDE 201
           ++DF +K   A K +N WV + T   IK+L+    ++S T  ++VNA+YFKG W  +  E
Sbjct: 87  QVDFVNKAFDARKEVNAWVHQQTKGNIKELIPHGVINSLTRLIIVNAVYFKGVWKKEFGE 146

Query: 202 RLTSDRDFYV--SKDKTIKVPMMYKRGDYKYGESAALNAQLIEIPYKGDQSSLIVVLPKD 375
             T    F+V  S +  I+V MM ++    +   A +  +++E+PY GD ++++++LP++
Sbjct: 147 ENTFHAAFFVPESHESKIEVEMMTRKMKVNFYYDADIKCRVVELPYSGDDTAMVIILPEE 206

Query: 376 KDGITQLQEALKDPKTLETAQQSMYSTEVDLYLPKFKIETETNLKDVLSNMNVNKIFNN- 552
             GI  L++++ D + +E  ++ M +T V++ +PKF++  +  L+ +L ++ V+ IF++ 
Sbjct: 207 PSGIFSLEKSI-DVEIMEKWRRLMINTTVEVSIPKFRLSQKLELRSLLQDLGVSDIFDSR 265

Query: 553 DAQITRLLKGESLSVSEAI 609
            A ++ +   + L VS AI
Sbjct: 266 KADLSGISAAKGLYVSSAI 284


>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score =  119 bits (287), Expect = 2e-27
 Identities = 55/171 (32%), Positives = 94/171 (54%), Gaps = 2/171 (1%)
 Frame = +1

Query: 52  AAKSINDWVEENTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKIDERLTSDRDFYV 231
           A K +N WVEE T  +I DL+ P   +  T   LVNAIYFKG W     +  +   +F  
Sbjct: 92  ARKHVNQWVEERTKKKICDLIAPGVFNMLTRLTLVNAIYFKGMWDKPFKKEHSHSSEFRT 151

Query: 232 SKDKTIKVPMMYKRGDYKYGESAALNAQLIEIPYKGDQSSLIVVLPKDKDGITQLQEALK 411
           +    ++V MM+++  +KY  S     +L+E+PY   Q S+++VLP + +G+ + ++ L 
Sbjct: 152 TSSNEVEVEMMFQKSKFKYLHSDKYKCKLLELPYVDTQLSMVLVLPDETEGLARFEQDLT 211

Query: 412 DPKTLE--TAQQSMYSTEVDLYLPKFKIETETNLKDVLSNMNVNKIFNNDA 558
             K  +   +  S    +V++Y+PKFK+ +E  L + L  + + K+F+  A
Sbjct: 212 HDKMTDIFNSVSSQRPADVEVYIPKFKMTSEFKLNEALQELGMKKMFDQAA 262


>SB_39665| Best HMM Match : Pox_A32 (HMM E-Value=0.023)
          Length = 1640

 Score = 35.5 bits (78), Expect = 0.034
 Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
 Frame = +1

Query: 343 QSSLIVVLPKDKDGITQLQEALKDPKTL-ETAQQSMYSTEVDLYLPKFKIETETNLKDVL 519
           + +L V +PK  +G+T +  +L+  +TL +T +  ++ T  +LYL   K+E E  L+  +
Sbjct: 587 EETLYVAVPKLSEGVTLVPGSLRVGETLQDTNRYDVFKTYEELYLS--KVEREDRLEQGI 644

Query: 520 SNMNVNKI 543
            + N+ K+
Sbjct: 645 QSENMRKL 652


>SB_5898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 35.5 bits (78), Expect = 0.034
 Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
 Frame = +1

Query: 343 QSSLIVVLPKDKDGITQLQEALKDPKTL-ETAQQSMYSTEVDLYLPKFKIETETNLKDVL 519
           + +L V +PK  +G+T +  +L+  +TL +T +  ++ T  +LYL   K+E E  L+  +
Sbjct: 38  EETLYVAVPKLSEGVTLVPGSLRVGETLQDTNRYDVFKTYEELYLS--KVEREDRLEQGI 95

Query: 520 SNMNVNKI 543
            + N+ K+
Sbjct: 96  QSENMRKL 103


>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
          Length = 3071

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 21/88 (23%), Positives = 44/88 (50%)
 Frame = +1

Query: 193  IDERLTSDRDFYVSKDKTIKVPMMYKRGDYKYGESAALNAQLIEIPYKGDQSSLIVVLPK 372
            ++E+     D Y+S  K +KV  + + GD K  E     A +I++  +  +SS +  + +
Sbjct: 779  LEEQYRVVEDKYLSAQKELKV--LNEEGDNKAFEQLQTEASVIQMKVEEVESSYMDAVDR 836

Query: 373  DKDGITQLQEALKDPKTLETAQQSMYST 456
            +KD   QL++  +  + L+   + +  T
Sbjct: 837  EKDLAGQLEDEREKNQFLQMDNEELKKT 864


>SB_48675| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1329

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +1

Query: 34  FSKNTVAAKSINDWVEENTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKIDERLTS 213
           F+K+ ++   + D    +  + I D+V+  + SS+  A      Y+   W+  +DER+ S
Sbjct: 225 FNKSIISPTKMTDPASISDQSNIPDIVDEINTSSSKPA----EYYYSDEWNEHVDERMRS 280


>SB_47578| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 744

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +1

Query: 217 RDFY-VSKDKTIKVPMMYKRGDYKYGESAALNAQLIEIPYKGDQSSLIVVLPKDKDGITQ 393
           RD + +S+D+ +++    +R          L  ++ E  +K +  SLI +  K K+ +++
Sbjct: 474 RDLHKMSEDEEVRLKREQERIQNYLTHIERLATEIDESAHKINTDSLIKIKWKMKETVSE 533

Query: 394 LQEALKDPKTL 426
           L +ALK+  TL
Sbjct: 534 LMQALKEIPTL 544


>SB_30045| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 294 LSIFIIAAFIHHGYFDCF 241
           LS++++   +HH YF CF
Sbjct: 298 LSLYVVVVTVHHHYFFCF 315


>SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)
          Length = 1709

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +1

Query: 232 SKDKTIKVPMMYKRGDYKYGESAALNAQLIEIPYKGDQSSLIVVLPKDKDGITQLQ 399
           S+  +I+       GD  Y E+A +N  L E     D   L+ V  KD     +L+
Sbjct: 261 SRSNSIEAGEFVANGDIGYNEAAGMNGSLSESSEDRDHPELMRVTIKDGSMAEELE 316


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.311    0.129    0.351 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,683,838
Number of Sequences: 59808
Number of extensions: 321606
Number of successful extensions: 626
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)