Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0372
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33450.1 68417.m04752 myb family transcription factor (MYB69)...    28   5.7  
At5g54020.1 68418.m06719 expressed protein                             27   7.5  

>At4g33450.1 68417.m04752 myb family transcription factor (MYB69)
           contains PFAM profile: Myb DNA binding domain PF00249;
           identical to cDNA  putative transcription factor (MYB69)
           mRNA, partial cds GI:3941495
          Length = 250

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -3

Query: 283 SLFRLLWSSF*APSPALALLTHQEDRSHRPRKERICSLLPHRRNSP 146
           S F   W +  +PS +L  L        R RK++ C L P+   SP
Sbjct: 130 STFNQTWHTVLSPSSSLTRLNRSHFGLWRYRKDKSCGLWPYSFVSP 175


>At5g54020.1 68418.m06719 expressed protein 
          Length = 556

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 62  DKMSPY*CAESNPITSKYCVIKSSR 136
           D  +PY C E N +  KYC+ K  R
Sbjct: 154 DDRNPYVCLECNLMVHKYCIEKLPR 178


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.313    0.133    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,522,826
Number of Sequences: 28952
Number of extensions: 208797
Number of successful extensions: 263
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)