Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0371
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp... 66 3e-12
SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c... 27 1.9
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 27 2.5
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ... 27 2.5
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 3.3
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 27 3.3
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 27 3.3
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 5.7
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 25 9.9
>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 66.5 bits (155), Expect = 3e-12
Identities = 50/148 (33%), Positives = 79/148 (53%), Gaps = 14/148 (9%)
Frame = +2
Query: 173 SSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVACDHELFV-TSLDEDP 349
SSG S D+ + GGIP S+ V+EED + Y+ VL K+F AEG+ DH +++ S+ E
Sbjct: 32 SSGSSSFDYYLSGGIPMKSLLVIEEDSMD-YASVLLKFFAAEGLKQDHVIWLGPSIGEMW 90
Query: 350 HKITSELPQPCALPPEDEKAPSTD-----------AEKMKIAWRYEGLSQVESSFGS--N 490
+ +LP P ++E + D E+MKIAWRYE +S+ ++
Sbjct: 91 FR---QLPGDSDRPNKNENSAGEDNHSSPPSKNPQQERMKIAWRYEQVSKTKAPTLDMIP 147
Query: 491 TNFGHNFDLSRYIDADTIEKSKIQYGTT 574
+ H+FDLS+ + I KS ++Y +
Sbjct: 148 PGYTHSFDLSK----NLIVKSDMKYAVS 171
>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 334
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 215 IPAGSIFVVEEDVLGVYSKVLFKYFIAEGVAC 310
IP+ + + + E LG +SKVL Y AE V+C
Sbjct: 278 IPSATSYDLIEASLGSFSKVLDTYQFAEVVSC 309
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 27.1 bits (57), Expect = 2.5
Identities = 10/41 (24%), Positives = 18/41 (43%)
Frame = -2
Query: 278 ITLCCTHQGHLPLQQKCCLQVFLHQLYGLRMEYRKIRMVGY 156
+TLCC H P K + + LR ++ ++ + Y
Sbjct: 437 LTLCCKHDFSTPRDVKLSFKAMFFPIAALRQKFWRVMLAQY 477
>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 454
Score = 27.1 bits (57), Expect = 2.5
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +2
Query: 368 LPQPCALPPEDEKAPSTDAEKMKIAWRYEGLSQVESSFGSNTNFGHNFDL--SRYIDADT 541
LP+ +P K+PST++ K+K A Y ++ +F N + + + A+
Sbjct: 58 LPKNEIMPKNGTKSPSTNSTKLKSAETYSSKNKWSMDCDEEFDFAANLEKFDKKQVFAEF 117
Query: 542 IEKSK 556
EK K
Sbjct: 118 REKDK 122
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.6 bits (56), Expect = 3.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 226 QHFCCRGRCPWCVQQS 273
QH C RG CP C++ S
Sbjct: 601 QHMCHRGPCPRCLEAS 616
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 26.6 bits (56), Expect = 3.3
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +2
Query: 335 LDEDPHKITSELPQPCALPPEDEKAPSTDA--EKMKIAWRYEGLSQVESSFGSNT 493
L P I PQP P DE+ TD+ K+A E L Q +S+ S+T
Sbjct: 219 LTVSPSSIQRLSPQPYVRPTSDERPIETDSSVSAPKVANHDEELKQGKSTSPSDT 273
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 548 KSKIQYGTTTWQDSTLSWQTTMRRGKLKSALFHK 649
KS + T +S LSWQ ++R +K ++HK
Sbjct: 9 KSLLIQWLTVESNSLLSWQLHVKRKSIKFDIYHK 42
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.8 bits (54), Expect = 5.7
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -1
Query: 348 GSSSKDVTNNSWSQATPSAMKYLNNTLLYTPRTSSSTTKMLPAG-IPPPTIWSKDG 184
GS + T++SW+ T S+ + TP +SSS + + + P T S G
Sbjct: 917 GSGTDSATSSSWTAETSSSAITSSVAASVTPTSSSSASSWSSSSEVDPSTAASATG 972
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 363 DVILCGSSSKDVTNNSWSQATPSAMKYLNNTLLYTPRT 250
+ +L S D+ NS ATP+++++ NN + PR+
Sbjct: 675 EFLLISDSKSDL--NSEEIATPNSLEFKNNPRIKVPRS 710
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,955,492
Number of Sequences: 5004
Number of extensions: 66157
Number of successful extensions: 234
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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