Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0371
(672 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0881 - 25623679-25623843,25624104-25624195,25624287-256244... 54 1e-07
09_02_0391 + 8482996-8483216,8484146-8484194,8484559-8487465 32 0.48
02_05_0620 - 30412004-30412429,30412509-30412646,30412729-304128... 32 0.48
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 31 0.63
01_05_0106 + 18160018-18160243,18160423-18160470,18160816-181609... 30 1.5
10_06_0187 - 11598240-11599508 30 1.9
09_04_0158 - 15197667-15198548,15201158-15201598 29 2.6
05_06_0060 - 25266735-25267210,25267323-25267569,25267650-252683... 29 2.6
04_04_0348 + 24568834-24568904,24569019-24569148,24569310-245694... 29 3.4
10_06_0140 + 11147019-11147791,11148301-11150524 29 4.5
11_01_0771 + 6453130-6454488 28 5.9
01_06_0181 - 27262425-27263337,27263452-27263633 28 5.9
12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,880... 28 7.8
02_05_0007 + 24918163-24918420,24919360-24919410,24919411-249194... 28 7.8
01_05_0548 + 23149271-23149568,23149766-23149845,23150137-231502... 28 7.8
>06_03_0881 -
25623679-25623843,25624104-25624195,25624287-25624446,
25624586-25624668,25624845-25624913,25625480-25625555,
25625645-25625895,25626387-25626537
Length = 348
Score = 54.0 bits (124), Expect = 1e-07
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Frame = +2
Query: 155 NNLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVACDHELFVTS 334
N +VSSGIP LD I+GGG GS+ ++ ED + +L + F+A+GV L
Sbjct: 37 NGAAFVSSGIPDLDRILGGGFLIGSVVMIMEDSDAPHHLLLLRSFMAQGVVHKQPLLFAG 96
Query: 335 LDEDPHKITSELPQPCALPPEDEK------APSTDA----EKMKIAWRYE 454
++P LP A ED + S+D E ++IAW+Y+
Sbjct: 97 PMKEPRLFLGTLP-AVASSKEDGRQRGMGAGTSSDGRTSDEALRIAWQYK 145
>09_02_0391 + 8482996-8483216,8484146-8484194,8484559-8487465
Length = 1058
Score = 31.9 bits (69), Expect = 0.48
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +2
Query: 260 VYSKVLFKYFIAEGVACDHELFVTSLDEDPHKITSELPQPCALPPEDEKAPSTDAEKMKI 439
+ + + + +IAEG + L V +E+ + EL C L PEDE T A+ + +
Sbjct: 407 IEKQCIMQQWIAEGFFSEVPLQVQ--EEEAERCYQELIDRCLLLPEDEAHGVTGAKMLNL 464
Query: 440 AWRYEGLSQVESSFGSN-TNFGHNF 511
+ + ++ SN N G NF
Sbjct: 465 FRSFAIYRSQDENYVSNPRNIGRNF 489
>02_05_0620 -
30412004-30412429,30412509-30412646,30412729-30412866,
30412966-30413139,30413211-30413684,30413775-30413917,
30414002-30414160,30414943-30415042
Length = 583
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +2
Query: 104 FRKFIDISTHINGTKVKNNLPYVSSGIPSLDHIVGGGIPAGS 229
FR ++ I+G + K L YV SG+ S +V GG AGS
Sbjct: 387 FRTGVEQGPQIDGEQFKKILQYVKSGVDSGATLVAGGDRAGS 428
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 31.5 bits (68), Expect = 0.63
Identities = 21/110 (19%), Positives = 51/110 (46%)
Frame = +2
Query: 113 FIDISTHINGTKVKNNLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFI 292
++ +S +K +L +++ + S ++VG + I + +G +++++ K F
Sbjct: 131 YVAVSEEAAIAALKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYMG-FARIMTKSFT 189
Query: 293 AEGVACDHELFVTSLDEDPHKITSELPQPCALPPEDEKAPSTDAEKMKIA 442
+E + + + K+ ++ Q ++PP +KAP +K K A
Sbjct: 190 SEFPHVERYFWTMVNQPNFKKVLGDVKQAESVPPVQKKAPPPKEQKPKEA 239
>01_05_0106 +
18160018-18160243,18160423-18160470,18160816-18160974,
18162056-18162219,18162778-18162885,18163695-18163865,
18163945-18164478,18164574-18164648,18164724-18164852,
18164975-18165049,18165129-18165338,18165529-18165681,
18165763-18165986,18166305-18166422,18166518-18166656,
18166745-18166946,18166981-18167149,18167190-18167267,
18167268-18167408,18167717-18167819,18169024-18169324,
18169450-18169518,18169602-18169626,18170946-18170975
Length = 1216
Score = 30.3 bits (65), Expect = 1.5
Identities = 25/101 (24%), Positives = 45/101 (44%)
Frame = +2
Query: 260 VYSKVLFKYFIAEGVACDHELFVTSLDEDPHKITSELPQPCALPPEDEKAPSTDAEKMKI 439
+ SK+ + +AEG DHE +SL+ P E C+ E+ ++ +K
Sbjct: 363 ITSKLASEVSLAEGKKKDHENMESSLEGSP---GPEAEVSCS-TAENSGYGTSGEDKSGT 418
Query: 440 AWRYEGLSQVESSFGSNTNFGHNFDLSRYIDADTIEKSKIQ 562
+E LS + GS + G + +S Y+ D + K++
Sbjct: 419 NTCFEDLSVNGNLHGSGNSQGDSDSISVYLTDDKVHTEKVE 459
>10_06_0187 - 11598240-11599508
Length = 422
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +2
Query: 326 VTSLDEDPHKITSELPQPCALPPEDEKAPSTDAEKMKIAWRYEGL-SQVESSFGS-NTNF 499
+T L E H + P+P A P+D + S E+ + YE + + +S + +T
Sbjct: 79 LTKLSELKHAYREKNPKPVAATPQDARLLSEIQEQQNLLKTYEVMVKKFQSQIQTRDTEI 138
Query: 500 GHNFDLSRYIDADTIEKSKIQ 562
H L + ID + KSK++
Sbjct: 139 TH---LQQQIDEAKLRKSKLE 156
>09_04_0158 - 15197667-15198548,15201158-15201598
Length = 440
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 312 SQATPSAMKYLNNTLLYTPRTSSSTTKMLPAGIPPP 205
S+ATP +L+N L P+T + PA PPP
Sbjct: 14 SEATPQHALWLSNLDLAVPKTHTPLVYYYPAPSPPP 49
>05_06_0060 -
25266735-25267210,25267323-25267569,25267650-25268345,
25268457-25268709,25268786-25269261,25270760-25270909
Length = 765
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/71 (22%), Positives = 33/71 (46%)
Frame = +2
Query: 458 LSQVESSFGSNTNFGHNFDLSRYIDADTIEKSKIQYGTTTWQDSTLSWQTTMRRGKLKSA 637
L + E S+ S N H+ ++ + AD + +++D +SW +RR ++ +
Sbjct: 450 LCEKEISYSSAVNLPHSLEMLLELVADKNRSVVLAVAGASYRDMLMSWVCRLRRLRVTNF 509
Query: 638 LFHKLLRNIYE 670
+ L + YE
Sbjct: 510 VVCALDQETYE 520
>04_04_0348 +
24568834-24568904,24569019-24569148,24569310-24569459,
24569546-24569650,24569808-24570029,24570162-24570274,
24570371-24570470,24571125-24571325,24571401-24571549,
24571624-24571765,24571851-24571991,24572098-24572286,
24572622-24572835,24573198-24573291,24573671-24573905,
24574242-24574433,24574919-24575017,24575443-24575532,
24575709-24575912,24575994-24576269,24576974-24577096,
24577453-24577608,24577686-24577802,24577878-24577957,
24578173-24578377,24578485-24578687,24578882-24578933
Length = 1350
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -2
Query: 656 LAICETKHFLISLCA*SFASLKYCLAKL*YHTGFYSFLLCQHQCICSSQSYV 501
L C T H + C F LK L ++ GF++ +L +CIC S S V
Sbjct: 73 LGECSTCHGSFAECPGHFGYLKLALPV--FNVGFFNCILDVLKCICKSCSRV 122
>10_06_0140 + 11147019-11147791,11148301-11150524
Length = 998
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 314 HELFVTSLDEDPHKITSELPQPCALPPEDEKAPSTDAEKMKIAW 445
H+L L+ D H I +EL A E ++ P A ++ AW
Sbjct: 25 HDLLRRDLERDVHYIRNELAMIAAAIEEHDRRPPPAAGDVRSAW 68
>11_01_0771 + 6453130-6454488
Length = 452
Score = 28.3 bits (60), Expect = 5.9
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -1
Query: 261 TPRTSSSTTKMLPAGIPPPTI 199
T +++ T+MLP+G+PPP +
Sbjct: 400 TVAAAATMTRMLPSGVPPPPV 420
>01_06_0181 - 27262425-27263337,27263452-27263633
Length = 364
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 314 HELFVTSLDEDPHKITSELPQPCALPPEDEKAPSTDAEKMKIAW 445
H + +S E+P+ TS P P A PP+ ++ D ++ I+W
Sbjct: 201 HRVVPSSPPEEPN--TS--PSPAAAPPDQQEGGDDDPDRGSISW 240
>12_01_0906 +
8799284-8799441,8800865-8801690,8801933-8802055,
8802144-8802210,8802611-8802714,8802798-8802900,
8803103-8803401,8804009-8804263,8805471-8805776,
8805866-8806194,8806829-8806916,8807027-8807164,
8807438-8807458
Length = 938
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 568 YYNLARQYFKLANDYAQREIKKCFVSQ 648
YY L Q F + N Q +KCFV Q
Sbjct: 665 YYGLLGQRFCMINKVYQENFEKCFVQQ 691
>02_05_0007 +
24918163-24918420,24919360-24919410,24919411-24919480,
24919645-24919830,24920127-24920275,24921310-24921417,
24921501-24921638,24922574-24922853,24922924-24923047,
24923197-24923312,24923612-24923619
Length = 495
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 121 YKYAYKWHKSEK*PTIRIFRYSI--LRPYSWW 210
Y A KW EK +R+ Y++ L+P+ WW
Sbjct: 233 YMLANKWMVDEK--ELRVIHYTLGPLKPWDWW 262
>01_05_0548 +
23149271-23149568,23149766-23149845,23150137-23150223,
23150421-23150729,23150774-23150899,23151977-23152360,
23152603-23152608
Length = 429
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = -1
Query: 336 KDVTNNSWSQATPSAMKYLNNTLLYTPRTSSSTTKMLPAGIPPPTIWSKDGIPEDTYGRL 157
K V WS TP Y ++ + K+ P T++ K+GIP+ ++
Sbjct: 92 KTVATIDWSMKTPRLQYYTSSMVDDVFTRLGEDIKVKPWA---HTVYGKNGIPDVQLDKI 148
Query: 156 FFTFVP 139
++F+P
Sbjct: 149 DYSFIP 154
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,998,285
Number of Sequences: 37544
Number of extensions: 387386
Number of successful extensions: 1314
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1314
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -