Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0371
(672 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25278| Best HMM Match : wnt (HMM E-Value=8.9e-18) 31 0.64
SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6) 29 3.4
SB_1024| Best HMM Match : Ank (HMM E-Value=0) 29 4.5
SB_51477| Best HMM Match : Coat_X (HMM E-Value=2.7) 29 4.5
SB_11546| Best HMM Match : DUF1407 (HMM E-Value=1.2) 29 4.5
SB_8923| Best HMM Match : wnt (HMM E-Value=2.5e-22) 29 4.5
SB_59600| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.5e-05) 28 6.0
SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4) 28 6.0
SB_34340| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_49098| Best HMM Match : Peptidase_M14 (HMM E-Value=4.5e-12) 28 6.0
SB_34469| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37) 28 7.9
SB_2867| Best HMM Match : Aerolysin (HMM E-Value=5.3e-06) 28 7.9
SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24) 28 7.9
SB_25452| Best HMM Match : CTF_NFI (HMM E-Value=1.2) 28 7.9
SB_23584| Best HMM Match : RVT_1 (HMM E-Value=0.0029) 28 7.9
>SB_25278| Best HMM Match : wnt (HMM E-Value=8.9e-18)
Length = 167
Score = 31.5 bits (68), Expect = 0.64
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +1
Query: 181 YSILRPYSWWRNTCRQHFCCRGRCPWCVQQSVI 279
YS+ W+ C+ H+CCR C C ++ ++
Sbjct: 131 YSVREQIKEWKCHCKFHWCCRVECAKCSKKLMV 163
>SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1388
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 167 YVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKV 274
YVS I D + GI +F+V +D++ V+ K+
Sbjct: 1175 YVSEPIEYFDLLTNDGIEVNDVFIVSDDLIQVHYKL 1210
>SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6)
Length = 493
Score = 29.1 bits (62), Expect = 3.4
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +1
Query: 202 SWWRNTCRQHFCCRGRCPWCVQQSVIQ 282
+WW NTC H C+G ++ +Q
Sbjct: 154 TWWDNTCTSHSKCQGSTTHSIRPCTLQ 180
>SB_1024| Best HMM Match : Ank (HMM E-Value=0)
Length = 891
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Frame = +2
Query: 335 LDEDPHKITSELPQPCALPPEDEKAP----STDAEKM-KIAWRYEGLSQVESSFGSNTNF 499
L++D H++ E + +PP E A S D + + + + YE S E+S +T F
Sbjct: 522 LNKDHHELEEECAESTDMPPNTEAAIMMVFSEDCDDIAQRKYSYESTS--ENSGNLSTIF 579
Query: 500 GHNFDLSR 523
H+F LSR
Sbjct: 580 EHSFILSR 587
>SB_51477| Best HMM Match : Coat_X (HMM E-Value=2.7)
Length = 320
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +2
Query: 101 SFRKFIDISTHINGTKVKNN-LPYVSSGIPSL 193
+F+KF THI G ++K+N +SSG+P +
Sbjct: 12 NFKKFAIFITHIFGKQIKDNRYTNISSGLPEV 43
>SB_11546| Best HMM Match : DUF1407 (HMM E-Value=1.2)
Length = 367
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +2
Query: 386 LPPEDEKAPSTDAEKMKIAWRYEGL--SQVESSFGSNTNFGHNFDLSRYIDADTIEKSK 556
LP ED+KA ++ +++ I WR S + TN NF + R I D ++ +
Sbjct: 16 LPQEDDKALASRVKELSIQWRAWACYRSSLPREEAECTNASCNFKVKRLIFLDDADEDR 74
>SB_8923| Best HMM Match : wnt (HMM E-Value=2.5e-22)
Length = 153
Score = 28.7 bits (61), Expect = 4.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 220 CRQHFCCRGRCPWCVQQSVI 279
CR H+CC RC C ++ V+
Sbjct: 130 CRFHWCCEVRCKKCKKERVV 149
>SB_59600| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.5e-05)
Length = 1119
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 167 YVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKY 286
YVS I D +V + +F+V +D++ V+ K+ K+
Sbjct: 907 YVSEPIEYFDLLVNDSVEVNDVFIVNDDLIQVHYKLGEKF 946
>SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)
Length = 435
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/34 (26%), Positives = 20/34 (58%)
Frame = -2
Query: 455 LHISRLFSFFLHQYLVLFHLLEVKHMVEGVLMLF 354
+H S LF++ +H Y + + + H+V ++ L+
Sbjct: 225 IHFSPLFTYLIHLYPISYRTIHFSHLVTYLIHLY 258
>SB_34340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = -2
Query: 635 HFLISLCA*SFASLKYCLAKL*YHTGFYSFLLCQHQCICSSQSYV 501
H++++ +S +Y ++ Y +++C QC+ SS YV
Sbjct: 51 HYVVTSAQYVVSSAQYVVSSAQYVVSSAQYVVCSAQCVVSSAQYV 95
>SB_49098| Best HMM Match : Peptidase_M14 (HMM E-Value=4.5e-12)
Length = 290
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 185 PSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGV 304
P L + G +P SI V ++ L YS+ L +F+A +
Sbjct: 124 PGLSDLYGFFLPPSSIIPVGKETLQDYSECLNSFFVANNI 163
>SB_34469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 444
Score = 27.9 bits (59), Expect = 7.9
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Frame = +2
Query: 245 EDVLGVYSKVLFKYFIAEGVACDHELFVTSLDEDPHKITSELP----QPCALP--PEDEK 406
EDV G + VL+K G E F T EDP ++ + P P LP PED K
Sbjct: 380 EDVAGQDASVLWKTVSLNGKRSVEEDFPTDGTEDPPRVFPKPPTVVLTPGKLPEIPEDVK 439
Query: 407 APST 418
T
Sbjct: 440 GSKT 443
>SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -1
Query: 135 ICVLISINFRKLRIFY*YIKPISVKYCLSIKIHY 34
+C+L+S+ + L + ++V YCLS+ +HY
Sbjct: 332 VCLLLSVRYC-LSVTVHCCLSVTVHYCLSVTVHY 364
>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
Length = 1052
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -3
Query: 622 PSAHSRLPA*STVLPSCSTIL 560
P+ HS LPA TVLPS T+L
Sbjct: 566 PALHSVLPALHTVLPSLHTLL 586
>SB_2867| Best HMM Match : Aerolysin (HMM E-Value=5.3e-06)
Length = 472
Score = 27.9 bits (59), Expect = 7.9
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Frame = +2
Query: 245 EDVLGVYSKVLFKYFIAEGVACDHELFVTSLDEDPHKITSELP----QPCALP--PEDEK 406
EDV G + VL+K G E F T EDP ++ + P P LP PED K
Sbjct: 408 EDVAGQDASVLWKTVSLNGKRSVEEDFPTDGTEDPPRVFPKPPTVVLTPGKLPEIPEDVK 467
Query: 407 APST 418
T
Sbjct: 468 GSKT 471
>SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)
Length = 652
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -1
Query: 312 SQATPSAMKYLNNTLLYTPRTSSSTTKMLPAGIPPPTIWSKDGI 181
S A PS N ++ T TS TK P IPP T KDG+
Sbjct: 542 STAQPSVSTTKPNDVVKTHMTSV-VTKPKPTSIPPTTGSPKDGV 584
>SB_25452| Best HMM Match : CTF_NFI (HMM E-Value=1.2)
Length = 1056
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -1
Query: 342 SSKDVTNNSWSQATPSAMKYLNNTLLYTPRTSSSTTKMLPAGIPPPTI 199
S+KDV + SW+ P A+ NN + S + K L P I
Sbjct: 838 STKDVQDRSWAHNAPDAIDDANNVEKVLGKASPAARKKLVLHATPEQI 885
>SB_23584| Best HMM Match : RVT_1 (HMM E-Value=0.0029)
Length = 511
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 189 DGIPEDTYGRLFFTFVPFICVLISINFRKLRI 94
DGIP + F F PF+ L + + R+ RI
Sbjct: 170 DGIPNKVWSLFAFEFAPFVAELYNSSLRQGRI 201
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,406,285
Number of Sequences: 59808
Number of extensions: 477171
Number of successful extensions: 1445
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1434
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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