Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0371
(672 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41559-3|AAC24262.1| 334|Caenorhabditis elegans Hypothetical pr... 75 3e-14
U41278-3|AAK31512.1| 453|Caenorhabditis elegans Hypothetical pr... 30 1.7
AL023838-7|CAE47473.1| 357|Caenorhabditis elegans Hypothetical ... 30 1.7
AL023838-6|CAB61038.2| 395|Caenorhabditis elegans Hypothetical ... 30 1.7
AF061201-1|AAD10194.1| 357|Caenorhabditis elegans RAD51 short i... 30 1.7
AB011382-1|BAA24982.1| 357|Caenorhabditis elegans RecA/Rad51/Dm... 30 1.7
Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical pr... 29 3.0
U40060-3|AAA81142.2| 974|Caenorhabditis elegans Hypothetical pr... 29 3.0
AY077615-1|AAL79359.1| 510|Caenorhabditis elegans KSR-2b protein. 29 4.0
AY077614-1|AAL79358.1| 550|Caenorhabditis elegans KSR-2a protein. 29 4.0
AL137227-5|CAB70240.2| 510|Caenorhabditis elegans Hypothetical ... 29 4.0
AL137227-4|CAB70239.2| 550|Caenorhabditis elegans Hypothetical ... 29 4.0
AF038618-9|AAB92066.1| 304|Caenorhabditis elegans Hypothetical ... 29 4.0
AC087794-1|AAG53701.2| 304|Caenorhabditis elegans Hypothetical ... 29 4.0
U40414-2|AAA81405.2| 634|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z93395-5|CAE18034.1| 519|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z83112-6|CAE17883.1| 519|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z81125-3|CAB03384.1| 790|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z81067-4|CAB02976.2| 632|Caenorhabditis elegans Hypothetical pr... 28 6.9
U39470-2|AAC71118.1| 862|Caenorhabditis elegans Temporarily ass... 27 9.2
AC024843-12|AAF60833.3| 986|Caenorhabditis elegans Hypothetical... 27 9.2
>U41559-3|AAC24262.1| 334|Caenorhabditis elegans Hypothetical
protein C26B2.6 protein.
Length = 334
Score = 75.4 bits (177), Expect = 3e-14
Identities = 42/145 (28%), Positives = 73/145 (50%), Gaps = 4/145 (2%)
Frame = +2
Query: 125 STHINGTKVKNNLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGV 304
S I G K L SSG S D ++GG + SI +++E Y L + F+AEG+
Sbjct: 7 SVQIAGCSTKKRLLETSSGCDSFDTLIGGALVNSSIVLIDEYRSRCYGSYLIRSFLAEGL 66
Query: 305 ACDHELFVTSLDEDPHKITSELPQPCALPPEDEKAPST----DAEKMKIAWRYEGLSQVE 472
H F+ EDP +I + + ++++ P++ + MKIAWRY + QV
Sbjct: 67 HHGHRCFIADPTEDPKEINLIPSRRTSTDMQNQEIPNSLPAENENSMKIAWRYGNVKQVS 126
Query: 473 SSFGSNTNFGHNFDLSRYIDADTIE 547
SS G +N + +D +++++ ++
Sbjct: 127 SSLGPLSN-ENQYDFTKHVENPNVD 150
>U41278-3|AAK31512.1| 453|Caenorhabditis elegans Hypothetical
protein F33G12.4 protein.
Length = 453
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +2
Query: 116 IDISTHINGTKVKNNL----PYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLG 259
I + ++N V NNL PYV S IPS++H+ GI A V E+ +G
Sbjct: 266 IGVLQNLNTIDVSNNLMTALPYVFSKIPSIEHV---GINANDQMVRLEEEIG 314
>AL023838-7|CAE47473.1| 357|Caenorhabditis elegans Hypothetical
protein Y43C5A.6b protein.
Length = 357
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +2
Query: 95 MRSFRKFIDISTHINGTKV---KNNLPYVSSGIPSLDHIVGGGIPAGSI 232
M+ KF+ + G +V ++ L + +G SLD ++GGGI GSI
Sbjct: 91 MKEAMKFVQMG-FTTGAEVHVKRSQLVQIRTGSASLDRLLGGGIETGSI 138
>AL023838-6|CAB61038.2| 395|Caenorhabditis elegans Hypothetical
protein Y43C5A.6a protein.
Length = 395
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +2
Query: 95 MRSFRKFIDISTHINGTKV---KNNLPYVSSGIPSLDHIVGGGIPAGSI 232
M+ KF+ + G +V ++ L + +G SLD ++GGGI GSI
Sbjct: 129 MKEAMKFVQMG-FTTGAEVHVKRSQLVQIRTGSASLDRLLGGGIETGSI 176
>AF061201-1|AAD10194.1| 357|Caenorhabditis elegans RAD51 short
isoform protein.
Length = 357
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +2
Query: 95 MRSFRKFIDISTHINGTKV---KNNLPYVSSGIPSLDHIVGGGIPAGSI 232
M+ KF+ + G +V ++ L + +G SLD ++GGGI GSI
Sbjct: 91 MKEAMKFVQMG-FTTGAEVHVKRSQLVQIRTGSASLDRLLGGGIETGSI 138
>AB011382-1|BAA24982.1| 357|Caenorhabditis elegans
RecA/Rad51/Dmc1-like protein protein.
Length = 357
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +2
Query: 95 MRSFRKFIDISTHINGTKV---KNNLPYVSSGIPSLDHIVGGGIPAGSI 232
M+ KF+ + G +V ++ L + +G SLD ++GGGI GSI
Sbjct: 91 MKEAMKFVQMG-FTTGAEVHVKRSQLVQIRTGSASLDRLLGGGIETGSI 138
>Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical protein
C23H4.6 protein.
Length = 1137
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +2
Query: 344 DPHKITSELPQPCALPPEDEKAPSTDAEKMKIAWRYEGLSQVESSFGSNTNFG 502
+ K+T E P+ A PP+ + PST + KI ++ +S+ + G G
Sbjct: 868 EKEKVTIERPRREADPPDLSEFPSTKDARKKIIEMHKAISRDAAECGDTVTIG 920
>U40060-3|AAA81142.2| 974|Caenorhabditis elegans Hypothetical
protein F38B6.4 protein.
Length = 974
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = +2
Query: 134 INGTK--VKNNLPYVSSG-IPSLDHIVGGGIPAGSIFVVEED 250
+ GTK VK LP +S+G + HI GGG+ +I V++++
Sbjct: 644 LRGTKLYVKKVLPLLSTGLVKGCAHITGGGLTENAIRVLDKN 685
>AY077615-1|AAL79359.1| 510|Caenorhabditis elegans KSR-2b protein.
Length = 510
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -1
Query: 321 NSWSQATPSAMKYLNNTLLYTPRTSSSTTKMLPAGIPPPTIWSKDGIPEDT 169
+SW +++ S ++ TSSS T P PPPT S + T
Sbjct: 19 SSWRRSSTSGSISQSSRTTSKTTTSSSVTSSNPINAPPPTATSSSSVLPST 69
>AY077614-1|AAL79358.1| 550|Caenorhabditis elegans KSR-2a protein.
Length = 550
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -1
Query: 321 NSWSQATPSAMKYLNNTLLYTPRTSSSTTKMLPAGIPPPTIWSKDGIPEDT 169
+SW +++ S ++ TSSS T P PPPT S + T
Sbjct: 23 SSWRRSSTSGSISQSSRTTSKTTTSSSVTSSNPINAPPPTATSSSSVLPST 73
>AL137227-5|CAB70240.2| 510|Caenorhabditis elegans Hypothetical
protein F58D5.4b protein.
Length = 510
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -1
Query: 321 NSWSQATPSAMKYLNNTLLYTPRTSSSTTKMLPAGIPPPTIWSKDGIPEDT 169
+SW +++ S ++ TSSS T P PPPT S + T
Sbjct: 19 SSWRRSSTSGSISQSSRTTSKTTTSSSVTSSNPINAPPPTATSSSSVLPST 69
>AL137227-4|CAB70239.2| 550|Caenorhabditis elegans Hypothetical
protein F58D5.4a protein.
Length = 550
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -1
Query: 321 NSWSQATPSAMKYLNNTLLYTPRTSSSTTKMLPAGIPPPTIWSKDGIPEDT 169
+SW +++ S ++ TSSS T P PPPT S + T
Sbjct: 23 SSWRRSSTSGSISQSSRTTSKTTTSSSVTSSNPINAPPPTATSSSSVLPST 73
>AF038618-9|AAB92066.1| 304|Caenorhabditis elegans Hypothetical
protein F42G8.5 protein.
Length = 304
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +2
Query: 284 YFIAEGVACDHELFVTSLDEDPHKITSELPQPCALPPEDEKAP 412
YF+ CD L T DP ++T+ LPP EK P
Sbjct: 129 YFLCTTKLCDLSLHHTKKHNDPARLTTITTHYVPLPPIFEKDP 171
>AC087794-1|AAG53701.2| 304|Caenorhabditis elegans Hypothetical
protein Y32G9A.8 protein.
Length = 304
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -1
Query: 267 LYTPRTSSSTTKMLPAGIPPPTI-WSKDGIPEDTYGRLFFT 148
+Y P S++ + G P P I W KD P + GR+ FT
Sbjct: 160 VYAPLDSAARIQCPIVGYPEPQIVWYKDKFPLEIEGRVKFT 200
>U40414-2|AAA81405.2| 634|Caenorhabditis elegans Hypothetical
protein F53B3.2 protein.
Length = 634
Score = 28.3 bits (60), Expect = 5.3
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = -1
Query: 339 SKDVTNNSWSQATPSAMKYLNNTLLYTPRTSSSTTKMLPAGIPPPTIWSKDGIPEDTYGR 160
S + NN W + TPS ++ +T T S T LP+ P TI P Y
Sbjct: 299 SSIIRNNVWKKVTPSVTPEYTTSVFWT--TPMSVTAELPS--EPSTITMLIPTPPSEYQT 354
Query: 159 LFFTF--VPFI 133
++ + +PFI
Sbjct: 355 VYSSTAGIPFI 365
>Z93395-5|CAE18034.1| 519|Caenorhabditis elegans Hypothetical
protein ZC101.3 protein.
Length = 519
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 354 LCGSSSKDVTNNSWSQATPSAMKYL 280
L G KDV+N WS+ +P A+ YL
Sbjct: 70 LTGPLMKDVSNWEWSRWSPFALSYL 94
>Z83112-6|CAE17883.1| 519|Caenorhabditis elegans Hypothetical
protein ZC101.3 protein.
Length = 519
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 354 LCGSSSKDVTNNSWSQATPSAMKYL 280
L G KDV+N WS+ +P A+ YL
Sbjct: 70 LTGPLMKDVSNWEWSRWSPFALSYL 94
>Z81125-3|CAB03384.1| 790|Caenorhabditis elegans Hypothetical
protein T22A3.5 protein.
Length = 790
Score = 27.9 bits (59), Expect = 6.9
Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 6/106 (5%)
Frame = +2
Query: 140 GTKVKNNLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVY----SKVLF--KYFIAEG 301
G +++ +P + + + +D +P G + + + VY ++V+ K ++ EG
Sbjct: 151 GEQIRAPVPVLKTIMDRIDLDKSNPLPEGWTVISHQSGMPVYYHKFTRVVTHSKPYLVEG 210
Query: 302 VACDHELFVTSLDEDPHKITSELPQPCALPPEDEKAPSTDAEKMKI 439
+ DHE+ V+S+ KI EL + + + K P T E +
Sbjct: 211 IVRDHEIPVSSIPCLYKKIMDELHE--NVEKQSSKCPMTYEESQSM 254
>Z81067-4|CAB02976.2| 632|Caenorhabditis elegans Hypothetical
protein F23A7.5 protein.
Length = 632
Score = 27.9 bits (59), Expect = 6.9
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Frame = +2
Query: 263 YSKVLFKYFIAEGVACDHELFVTSLDE---DPHKITSELPQPCALPPEDEKAPSTDAEKM 433
YS +L ++ + + E TSL+E PH LP + PP EK+PS +
Sbjct: 319 YSSILRDPRLSGRITLNQETLRTSLNEVFPQPHT----LPFGGSCPPGQEKSPSNGHNLL 374
Query: 434 KIAWRYEGLSQVESSFG-SNTNFG---HNFDLSRYIDAD 538
++ G V S+ S+T+ G N D S+ ++ D
Sbjct: 375 PHQQKFGGSIPVSSTLSDSHTSNGGSTPNQDTSQILEKD 413
>U39470-2|AAC71118.1| 862|Caenorhabditis elegans Temporarily
assigned gene nameprotein 127 protein.
Length = 862
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +2
Query: 326 VTSLDEDPHKITSELPQPCALPPEDEKAPS 415
V DED H I +P P LPP K PS
Sbjct: 802 VLEKDEDQHSIEVSVPPPPELPP-PSKTPS 830
>AC024843-12|AAF60833.3| 986|Caenorhabditis elegans Hypothetical
protein Y61A9LA.10 protein.
Length = 986
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +2
Query: 362 SELPQPCALPPEDEKAPSTDAEKMKIAWRYEGLSQV---ESSFGSNTNFGHNFDLSR 523
+ LP PC LP E +K + E+ K+ + GL V + + + HNF+ R
Sbjct: 239 TSLPDPCPLPDEIKKRALNEKER-KVYAPFSGLGGVIYDKDAIYIESKNAHNFNRKR 294
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,281,007
Number of Sequences: 27780
Number of extensions: 373759
Number of successful extensions: 1286
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1283
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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