Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0371
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    27   0.21 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.1  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   3.5  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   3.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   8.1  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -1

Query: 213 PPPTIWSKDG-IPEDTYGRLFFTFVPF 136
           P P ++  D  +PE T  R ++ FVPF
Sbjct: 455 PNPDVFDPDNFLPEKTANRHYYAFVPF 481


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 6/31 (19%), Positives = 19/31 (61%)
 Frame = +2

Query: 356  ITSELPQPCALPPEDEKAPSTDAEKMKIAWR 448
            +T  +    ++PPED +  +  ++ ++++W+
Sbjct: 1103 LTQTMEDVPSIPPEDVRCAALTSQSLQVSWQ 1133


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 6/31 (19%), Positives = 19/31 (61%)
 Frame = +2

Query: 356  ITSELPQPCALPPEDEKAPSTDAEKMKIAWR 448
            +T  +    ++PPED +  +  ++ ++++W+
Sbjct: 1099 LTQTMEDVPSIPPEDVRCAALTSQSLQVSWQ 1129


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 206 GGGIPAGSIFVVEEDVLGV 262
           G GIP G+ ++++ DV+ V
Sbjct: 136 GSGIPMGAKYLMDSDVIFV 154


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 206 GGGIPAGSIFVVEEDVLGV 262
           G GIP G+ ++++ DV+ V
Sbjct: 136 GSGIPMGAKYLMDSDVIFV 154


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 213 PPPTIWSKDGIPEDT 169
           PPP +W ++G   +T
Sbjct: 339 PPPLVWRRNGADLET 353


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -1

Query: 312 SQATPSAMKYLNNTLLYTPRTSSSTTKMLPAGIPP 208
           SQA+P+++ Y     + T      TTK+    + P
Sbjct: 124 SQASPTSIPYATRAEIKTESIQPETTKVDTREVQP 158


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 531 SMYLLKSKLCPKL 493
           S Y+LKS L PKL
Sbjct: 332 SKYILKSTLTPKL 344


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 636 ALFNFPLRIVVCQLKVLSCQVVVPYWI 556
           AL  F L +     K+    + VPYWI
Sbjct: 324 ALSVFALILTALLRKMQEMSIEVPYWI 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,324
Number of Sequences: 438
Number of extensions: 4716
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)