Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0371
         (672 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11220.1 68416.m01364 Paxneb protein-related contains Pfam pr...    74   8e-14
At2g45340.1 68415.m05642 leucine-rich repeat transmembrane prote...    30   1.2  
At3g59490.1 68416.m06638 expressed protein                             29   2.8  
At2g41420.1 68415.m05111 proline-rich family protein contains pr...    28   4.9  
At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger) fa...    28   4.9  
At1g78310.1 68414.m09126 VQ motif-containing protein contains PF...    28   4.9  
At5g51460.3 68418.m06381 trehalose-6-phosphate phosphatase (TPPA...    28   6.5  
At5g51460.2 68418.m06380 trehalose-6-phosphate phosphatase (TPPA...    28   6.5  
At5g51460.1 68418.m06379 trehalose-6-phosphate phosphatase (TPPA...    28   6.5  
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ...    28   6.5  
At1g80930.1 68414.m09495 MIF4G domain-containing protein / MA3 d...    28   6.5  
At4g20860.1 68417.m03026 FAD-binding domain-containing protein s...    27   8.6  
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01...    27   8.6  

>At3g11220.1 68416.m01364 Paxneb protein-related contains Pfam
           profile PF05625: PAXNEB protein; similar to Paxneb
           protein (GI:10129788) [Mus musculus]; similar to PAX
           neighbour protein (GI:15887001) [Takifugu rubripes]
          Length = 355

 Score = 74.1 bits (174), Expect = 8e-14
 Identities = 44/148 (29%), Positives = 76/148 (51%), Gaps = 4/148 (2%)
 Frame = +2

Query: 101 SFRKFIDI--STHINGTKV-KNNLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSK 271
           SF + I +  S  I G K   N   ++SSGI  LD I+GGG P GS+ +V ED    +  
Sbjct: 11  SFSRNISVVSSPQIPGLKSGPNGTAFISSGIRDLDRILGGGYPLGSLVMVMEDPEAPHHM 70

Query: 272 VLFKYFIAEGVACDHELFVTSLDEDPHKITSELPQPCALPPEDEKAPSTD-AEKMKIAWR 448
            L + ++++G+  +  L   S  +DP      LP P +   +   AP  D  E ++IAW+
Sbjct: 71  DLLRTYMSQGLVNNQPLLYASPSKDPKGFLGTLPHPASSKEDKPTAPDPDQGESLRIAWQ 130

Query: 449 YEGLSQVESSFGSNTNFGHNFDLSRYID 532
           Y     +E+   +  ++ ++FD+ + ++
Sbjct: 131 YR--KYLENQKNAIDDYSNDFDMRKPLE 156


>At2g45340.1 68415.m05642 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 691

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 333 DVTNNSWSQATPSAMKYLNNTLLYT 259
           D+ NNS+S   PSA+K LNN   Y+
Sbjct: 218 DIRNNSFSGFVPSALKRLNNGFQYS 242


>At3g59490.1 68416.m06638 expressed protein
          Length = 243

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/72 (23%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
 Frame = +2

Query: 161 LPYVSSGIPSLDHIVGGGIPAGS---IFVVEEDVLGVYSKVLFKYFIAEGVACDHELFVT 331
           +P + + + SL  ++  G+P      + V+E+ +  +  + L K F++  +  + ELF  
Sbjct: 55  MPELQNRLLSLLELIREGLPVFKDLKVMVIEDMIYLINVRSLPK-FVSSSLDSEPELFFI 113

Query: 332 SLDEDPHKITSE 367
            L++DP K+ ++
Sbjct: 114 DLEQDPPKMVTQ 125


>At2g41420.1 68415.m05111 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 98

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 225 PAGIPPPTIWSKDGIPEDTY 166
           P G+PPP  +  +G P+D Y
Sbjct: 8   PVGVPPPQGYPPEGYPKDAY 27


>At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 683

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 261 TPRTSSSTTKMLPAGIPPPTIWSKDGIPEDTYGR 160
           T R +    ++  + IP  TIW    IPED + R
Sbjct: 418 TDRQAHQVAQLAHSRIPIHTIWLSHAIPEDAFAR 451


>At1g78310.1 68414.m09126 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 311

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -1

Query: 315 WSQATPSAMKYLNNTLL--YTPRTSSSTTKMLPAGIPPPTIWSKDGIPEDTYGRL 157
           W Q   +A    +N+    + P  SS+ ++ +P  IP P ++     P+  YG L
Sbjct: 225 WYQQQENAPPSQHNSFPPPHPPPPSSAVSQTVPTSIPAPPLFGCSSSPKSPYGLL 279


>At5g51460.3 68418.m06381 trehalose-6-phosphate phosphatase (TPPA)
           identical to trehalose-6-phosphate phosphatase (AtTPPA)
           [Arabidopsis thaliana] GI:2944178
          Length = 385

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
 Frame = -1

Query: 315 WSQATPSAMKYLNNTLLYTPRT---------SSSTTKMLPAGIPPPTIWSKDGIPED 172
           +S A  +A+   NN LL  PR          S+     + +  PPPTI +KD +  D
Sbjct: 32  YSSAAATAISQNNNLLLTVPRKKTGILDDVKSNGWLDAMKSSSPPPTILNKDNLSND 88


>At5g51460.2 68418.m06380 trehalose-6-phosphate phosphatase (TPPA)
           identical to trehalose-6-phosphate phosphatase (AtTPPA)
           [Arabidopsis thaliana] GI:2944178
          Length = 384

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
 Frame = -1

Query: 315 WSQATPSAMKYLNNTLLYTPRT---------SSSTTKMLPAGIPPPTIWSKDGIPED 172
           +S A  +A+   NN LL  PR          S+     + +  PPPTI +KD +  D
Sbjct: 32  YSSAAATAISQNNNLLLTVPRKKTGILDDVKSNGWLDAMKSSSPPPTILNKDNLSND 88


>At5g51460.1 68418.m06379 trehalose-6-phosphate phosphatase (TPPA)
           identical to trehalose-6-phosphate phosphatase (AtTPPA)
           [Arabidopsis thaliana] GI:2944178
          Length = 385

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
 Frame = -1

Query: 315 WSQATPSAMKYLNNTLLYTPRT---------SSSTTKMLPAGIPPPTIWSKDGIPED 172
           +S A  +A+   NN LL  PR          S+     + +  PPPTI +KD +  D
Sbjct: 32  YSSAAATAISQNNNLLLTVPRKKTGILDDVKSNGWLDAMKSSSPPPTILNKDNLSND 88


>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
           subunit (RPB205) (RPII) (RPB1) nearly identical to
           P|P18616 DNA-directed RNA polymerase II largest subunit
           (EC 2.7.7.6) {Arabidopsis thaliana}
          Length = 1840

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -2

Query: 647 CETKHFLISLCA*SFASLKYCLAKL*YHTGFYSFLLCQHQCICSSQSYV 501
           CET    ++ C   F  L+  LAK  YH GF   +L   +C+C + S +
Sbjct: 66  CETCMANMAECPGHFGYLE--LAKPMYHVGFMKTVLSIMRCVCFNCSKI 112


>At1g80930.1 68414.m09495 MIF4G domain-containing protein / MA3
           domain-containing protein similar to SP|Q9P6R9 Cell
           cycle control protein cwf22 {Schizosaccharomyces pombe};
           contains Pfam profiles PF02854: MIF4G domain, PF02847:
           MA3 domain
          Length = 900

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 568 YYNLARQYFKLANDYAQREIKKCFVSQ 648
           YY L  Q F + N   Q   +KCFV Q
Sbjct: 701 YYGLLGQRFCMINKIHQENFEKCFVQQ 727


>At4g20860.1 68417.m03026 FAD-binding domain-containing protein
           simlar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 530

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 586 QYFKLANDYAQREIKKCFVSQIAKKYL 666
           QYFK  +DY Q+ + +    ++ K++L
Sbjct: 369 QYFKAKSDYVQKPVPENVFEEVTKRFL 395


>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01612:
            reticulocyte binding protein; contains TIGRFAM TIGR00864:
            polycystin cation channel protein; similar to
            fimbriae-associated protein Fap1 [Streptococcus
            parasanguinis] (GI:3929312)
          Length = 1498

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +2

Query: 317  ELFVTSLDEDPHKITSELPQPCALPPEDEKAPSTDAEKMKIAWRYEGLSQVESS 478
            E   T  +E+P K+T E  +   +  E+EK    +A KMK   R E +++ + +
Sbjct: 1198 EKSATPEEEEPPKLTKEEEE--LIKKEEEKRKQKEAAKMKEQHRLEEIAKAKEA 1249


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,962,911
Number of Sequences: 28952
Number of extensions: 328120
Number of successful extensions: 1056
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)