Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0370
(585 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3835| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23) 73 2e-13
SB_34578| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23) 73 2e-13
SB_23882| Best HMM Match : Cyt-b5 (HMM E-Value=9.2e-19) 50 2e-06
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0) 44 7e-05
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34) 44 9e-05
SB_58806| Best HMM Match : Cyt-b5 (HMM E-Value=2.2e-20) 41 9e-04
SB_31956| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_49983| Best HMM Match : Cyt-b5 (HMM E-Value=8.4e-12) 35 0.043
SB_46990| Best HMM Match : Keratin_B2 (HMM E-Value=4.6) 31 0.91
SB_2333| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_21129| Best HMM Match : Pkinase (HMM E-Value=2.5e-07) 29 3.7
SB_13995| Best HMM Match : ASC (HMM E-Value=0.0034) 29 3.7
SB_4780| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0) 28 4.9
SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15) 27 8.5
SB_23380| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_45172| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_3835| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)
Length = 109
Score = 72.5 bits (170), Expect = 2e-13
Identities = 38/85 (44%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Frame = +2
Query: 8 YTRAEVAARDNNKQNLIIIDNVVYDVAAFLEDHPGGTEVLVDNAGSDASECFHEVGHSEI 187
YT EV + ++I N V+DV FL++HPGG EVL++ AG DASE F +VGHS
Sbjct: 10 YTFDEVKNHNKAGGCWLVIHNKVFDVTKFLDEHPGGEEVLLEQAGGDASESFEDVGHSSD 69
Query: 188 AIEWRNTFKVGEIVD-EEKLEVKCK 259
A E N + +GE+ + + K +VK K
Sbjct: 70 ARELMNEYCIGELREADRKDDVKPK 94
>SB_34578| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)
Length = 172
Score = 72.5 bits (170), Expect = 2e-13
Identities = 38/85 (44%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Frame = +2
Query: 8 YTRAEVAARDNNKQNLIIIDNVVYDVAAFLEDHPGGTEVLVDNAGSDASECFHEVGHSEI 187
YT EV + ++I N V+DV FL++HPGG EVL++ AG DASE F +VGHS
Sbjct: 10 YTFDEVKNHNKAGGCWLVIHNKVFDVTKFLDEHPGGEEVLLEQAGGDASESFEDVGHSSD 69
Query: 188 AIEWRNTFKVGEIVD-EEKLEVKCK 259
A E N + +GE+ + + K +VK K
Sbjct: 70 ARELMNEYCIGELREADRKDDVKPK 94
>SB_23882| Best HMM Match : Cyt-b5 (HMM E-Value=9.2e-19)
Length = 167
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Frame = +2
Query: 8 YTRAEVAARDNNKQNLIIIDNVVYDVAAFLEDHPGGTEVLVDNAGSDASECFH--EV-GH 178
++R E+ ++ +I VYD++ F E HPGG +VL+ N+G D + E+ H
Sbjct: 10 FSREEIGRHKSDGDLWVIHSGKVYDISKFSERHPGGKDVLLLNSGQDVTSIMSNGEIHKH 69
Query: 179 SEIAIEWRNTFKVGEIVDE 235
S+IA W + +G + E
Sbjct: 70 SQIAYGWLKKYNIGRLQAE 88
>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
Length = 672
Score = 44.4 bits (100), Expect = 7e-05
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Frame = +2
Query: 8 YTRAEVAARDNNKQNL-IIIDNVVYDVAAFLEDHPGGTEVLVDNAGS--DASECFHEVGH 178
Y++ EV+ +N K + + VYD+ F++ HPGGT ++ AG+ + + V
Sbjct: 204 YSKEEVSKHNNRKSRIWVTYKGGVYDITDFIDGHPGGTSKIILAAGAALEPYWAMYAVHK 263
Query: 179 SEIAIEWRNTFKVGEIVDEEK-LEVKCKQP 265
E +E +++G++ E++ +E K P
Sbjct: 264 KEEVLEILEEYRIGDLAHEDQVIEFKEDDP 293
>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
Length = 1790
Score = 44.0 bits (99), Expect = 9e-05
Identities = 30/88 (34%), Positives = 41/88 (46%)
Frame = +2
Query: 56 IIIDNVVYDVAAFLEDHPGGTEVLVDNAGSDASECFHEVGHSEIAIEWRNTFKVGEIVDE 235
++I VYD+ F E+ P G +L A DA++ F E HS A VG V+E
Sbjct: 1247 VVIHGKVYDLKEFKEEAPCGESLLQKYAACDATKAFEEANHSYEARMMMQDHLVGTFVEE 1306
Query: 236 EKLEVKCKQPSAAESAEPLTLGGLLAVY 319
L+ S +E TLG LL +Y
Sbjct: 1307 FALDRALTVSSPLIDSE-RTLGLLLGLY 1333
>SB_58806| Best HMM Match : Cyt-b5 (HMM E-Value=2.2e-20)
Length = 142
Score = 40.7 bits (91), Expect = 9e-04
Identities = 24/95 (25%), Positives = 48/95 (50%)
Frame = +2
Query: 8 YTRAEVAARDNNKQNLIIIDNVVYDVAAFLEDHPGGTEVLVDNAGSDASECFHEVGHSEI 187
YT EV + +++++ VYD++ ++ HPGG ++ AG + ++ F + +
Sbjct: 13 YTLDEVKEHCSKGDCWVVVEDSVYDLSKWIGHHPGGELPILYMAGRECTDVFKAFHPAWV 72
Query: 188 AIEWRNTFKVGEIVDEEKLEVKCKQPSAAESAEPL 292
+ FK+G++ D K + K+ S +E E L
Sbjct: 73 FTKKLPAFKIGKLDDTRK---EKKETSLSEDFEKL 104
>SB_31956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 319
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +2
Query: 29 ARDNNKQNL-IIIDNVVYDVAAFLEDHPGGTEVLVDNAGSDASECF 163
+R N +QN + I VYDV FL HPGG E+L+ AG D + F
Sbjct: 31 SRLNTEQNAHLAIHGKVYDVTNFLLRHPGGKELLLIGAGRDVTLVF 76
>SB_49983| Best HMM Match : Cyt-b5 (HMM E-Value=8.4e-12)
Length = 303
Score = 35.1 bits (77), Expect = 0.043
Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Frame = +2
Query: 8 YTRAEVAARDNNKQNL-IIIDNVVYDVAAFLEDHPGGTEVLVDNAGS--DASECFHEVGH 178
++ +EVA + + + ++ VYD+ F+E HPGG ++++ AGS D H+
Sbjct: 158 FSLSEVAKHTDARHGVWTTYEDGVYDLTDFIEQHPGGKKMIMLAAGSRLDPYWNIHDFHK 217
Query: 179 SEIAIEWRNTFKVGEIVDEE 238
+ ++ + F++G + E+
Sbjct: 218 RDDIVKILSEFRIGSLRKEK 237
>SB_46990| Best HMM Match : Keratin_B2 (HMM E-Value=4.6)
Length = 782
Score = 30.7 bits (66), Expect = 0.91
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = -1
Query: 219 PTLNVLRHSMAISLWPTSWKHSEASEPALSTRTSVPPGW 103
P VL+ + A L T W+ SEA P S R S P GW
Sbjct: 283 PLSEVLQLTGATQL--TEWEFSEACHPYTSGRGSTPEGW 319
>SB_2333| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +2
Query: 8 YTRAEVAARDNNKQNLIIIDNVVYDVAAFLED--HPGGTEVLVDNAGSDASECFHEV 172
+ A A++ K L +D V +AA + D HPG T + NAGS+ + ++++
Sbjct: 206 HATAVFLAKERVKAVLEPLDEVASLIAAIVHDVDHPGYTNSFLCNAGSELAILYNDI 262
>SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 605
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = -1
Query: 249 TSNFSSSTISPTLNVLRHSMAISLWPTSWKHSEASEPALSTRTSVPPGWSSRKAATSYTT 70
T + SSS I+P N+L+ S + ++P + S+ + P + R A+++ T
Sbjct: 283 TKSGSSSQITPIRNILKRSDSAPMYPRKGNSDKTDAKNCSSAPTTPLALTPRSASSASKT 342
>SB_21129| Best HMM Match : Pkinase (HMM E-Value=2.5e-07)
Length = 786
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = +1
Query: 367 PVRLARPVQCALFAKTTSGHLQHASSSDIRMDLT*SGFKWVIKKKWL 507
PVR RP C T+G H SD+ SG K WL
Sbjct: 166 PVR-QRPSSCPSTENVTTGSSSHVRGSDVAQPAQYSGLKTRTSDSWL 211
>SB_13995| Best HMM Match : ASC (HMM E-Value=0.0034)
Length = 610
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 173 GHSEIAIEWRNTFKVGEIVDEEKLEV--KCKQPSAAESAEPLTLGGLL 310
G E+ + WR +V + E L+ KC QP + A LT+G L
Sbjct: 93 GFEELVLGWRCLNRVNMMYQEGGLKCLEKCPQPCTYKFARALTIGSYL 140
>SB_4780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 799
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/42 (42%), Positives = 20/42 (47%)
Frame = -1
Query: 219 PTLNVLRHSMAISLWPTSWKHSEASEPALSTRTSVPPGWSSR 94
P VL+ + AI L T W SEA P S RT V W R
Sbjct: 536 PLSEVLQLTGAIQL--TEWGFSEACHPYTSGRTRVTSPWPRR 575
>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
Length = 2726
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Frame = -1
Query: 258 LHFTSNFSSSTISPTLNVLRHSMAISLWPTSWKHSEASEPALSTRTS------VPPGWSS 97
LH SS + S + S A + SW +S P+LS+R S PPG ++
Sbjct: 834 LHPIQKVSSLSSSIGSTLASQSTASASHIPSWSSLSSSFPSLSSRLSSASSSASPPGTTT 893
Query: 96 RKAATSYTTLSM 61
+++S+ +LS+
Sbjct: 894 SSSSSSFPSLSL 905
>SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)
Length = 1724
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +2
Query: 197 WRNTFKVGEIVDEEKLEVKCKQPSAAESAEPLTLGGLLAVYGPPVAMAVLAYLL 358
W NT +GE++ EEK++V Q + P L ++++ P +++ AY+L
Sbjct: 1477 WANTLGLGELLPEEKMKVHL-QNEIKYNDSPYGL-RVISIGEPAMSLEDTAYVL 1528
>SB_23380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 544
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +1
Query: 508 GYSGTMSEL*CAE--TMLTCSKSSLWNT 585
G SGTM CA T L C +++WNT
Sbjct: 406 GVSGTMERKICAVGVTKLLCEPTAMWNT 433
>SB_45172| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 534
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 183 SLWPTSWKHSEASEPALSTRTSVPPGWSSRKAATSY 76
SLWP SW +E L R S P W +R + +
Sbjct: 367 SLWPPSWVRVTKNERRLMFRHS-NPSWRTRTTVSGF 401
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,274,068
Number of Sequences: 59808
Number of extensions: 274755
Number of successful extensions: 851
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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