Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0370
         (585 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.9  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   3.9  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   5.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   5.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.1  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 108 GWSSRKAATSYTTLSMMIRFCLLLSRAATSALVYL 4
           GW        + TL + + FC++L  A ++A VY+
Sbjct: 134 GWLLLMLYLLFATLPLRLSFCVVL--ACSTATVYV 166


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -1

Query: 99  SRKAATSYTTLSMMIRFCLLLSRAATSALVYLW 1
           S   AT+Y   S+ +   LLL       + Y+W
Sbjct: 83  SMHTATNYYLFSLAVSDLLLLISGLPPEIYYIW 115


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 411 NYLRPPSTRILVGYKD 458
           NY+ P +T+ + GY D
Sbjct: 299 NYMGPVATKAMKGYSD 314


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 226 DFANLECVAPLNGD 185
           +FANL+C+ P  GD
Sbjct: 599 EFANLQCIVP-TGD 611


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 406 RTARIVLGELAEQERVEQVREDSHGDRRPVH 314
           + ARIVL    E+ R E V      +  P+H
Sbjct: 320 KLARIVLLNFQEERRSEPVEPPRRKNNCPLH 350


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -1

Query: 183 SLWPTSWK 160
           +LWPT WK
Sbjct: 579 ALWPTEWK 586


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,699
Number of Sequences: 438
Number of extensions: 2137
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)