Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0365
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    29   0.53 
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac...    28   0.93 
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.1  
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.1  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    26   3.7  
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    25   6.5  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    25   6.5  
SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces p...    25   8.6  

>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 21/53 (39%), Positives = 29/53 (54%)
 Frame = -2

Query: 574 SKFPSRKRLNQNRTVRSTPPLSKRITI*KSFTQKSQTMKILCQFEVPITIKRQ 416
           S F ++KRL +  T+ S+P L  R T+ KS   KS  +K+L   E    IK Q
Sbjct: 272 STFATQKRLRRLATLESSPAL--RSTL-KSLQSKSSPVKLLKLKEEKAKIKNQ 321


>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 131 VRSGSSQVGAQGFIVK*EFSGQSFSTEPGWLREPSGI 21
           ++ G++ V   GF +  ++ GQ+ S    W RE SG+
Sbjct: 32  LKEGATIVPFAGFSMPVQYKGQTISASHKWTREHSGL 68


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -1

Query: 266 SRNQLIQSLSWSGHSSTGTHFPDLSNKKPSSQWHVGSNAATQLVCVRSGSSQ 111
           S +    +++ +G  S G+ +P  S    S  W+  ++AAT      S SSQ
Sbjct: 132 SSSNSTSTMNSTGSVSGGSVYPTNSTTNSSISWNSSTSAATNTSSSSSSSSQ 183


>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 386

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 320 SPMDFSNARSRAKPLPI-ISRNQLIQSLSWSGHSSTGTHFP 201
           SP D  N RSRAK +P  +S  +  + LS SG  +   + P
Sbjct: 216 SPSDGQNVRSRAKKIPSGMSAEESDELLSSSGRKTRSFNTP 256


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 258  SVDTVTLLVWTFINGYAFSRF 196
            S+D V+ L WT I+ Y F +F
Sbjct: 1076 SLDLVSPLTWTVIDSYEFQQF 1096


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/50 (30%), Positives = 18/50 (36%)
 Frame = +1

Query: 106 PTCEDPDLTHTSCVAALLPTCHCDDGFLFDKSGKCVPVDECPDQESDCIN 255
           P   +P      C A L P CH D    F     C+  +  P Q  D  N
Sbjct: 48  PVLYEPVTCKAPCKAVLNPYCHIDTRAKFWICPFCLQRNMLPPQYKDISN 97


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = -1

Query: 599 SSTWLILQIKISITKAFKPKSHGAFNSSPLQTNYHLKKFHSKISNHEDSLSIRSTYYNKT 420
           S++  + QI++S+ +    + +   NS  L+     K+    +SN    LSIR+  YN T
Sbjct: 144 SASATLSQIQLSVERT-STRDY-PLNSKNLKFRNFRKRLTGLLSNFVSQLSIRNYLYNST 201


>SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 208

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 565 PSRKRLNQNRTVRSTPPLSKRITI*KSFTQKSQTMKI 455
           PS KR N+     S PP+ ++  I  +   KSQ+  +
Sbjct: 94  PSLKRENKEVNANSKPPVKQQEVIESTVISKSQSPSV 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,699,205
Number of Sequences: 5004
Number of extensions: 56309
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)