Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0365
(611 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0911 - 7031099-7031779,7031896-7032221,7032306-7032318,703... 32 0.41
06_01_0575 + 4062084-4063135,4063518-4063620 31 0.95
12_01_0101 - 779047-779298,779459-779711,779857-780005,780033-78... 30 1.3
11_01_0101 - 738305-738556,738723-738977,739306-739554,739649-73... 30 1.3
08_02_0325 - 15787791-15788168 29 2.9
06_03_0473 + 21190878-21191188,21191269-21192355,21192972-211931... 28 6.7
04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476 28 6.7
03_05_0431 + 24221881-24224586 28 6.7
10_06_0035 - 9896289-9896390,9897394-9897503,9897587-9897715,989... 27 8.9
04_03_0348 + 14735581-14737071 27 8.9
>06_01_0911 -
7031099-7031779,7031896-7032221,7032306-7032318,
7032402-7032414,7032498-7032510,7032592-7032790
Length = 414
Score = 31.9 bits (69), Expect = 0.41
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 210 AFSRFVEQEAIITVACWEQCRYAAGVCQVWIFTGRRAG 97
+F RF+ Q + VA W+QC Y+ G W++ G G
Sbjct: 68 SFPRFISQTHLPGVAVWKQCDYSDG---KWVWDGDHGG 102
>06_01_0575 + 4062084-4063135,4063518-4063620
Length = 384
Score = 30.7 bits (66), Expect = 0.95
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -2
Query: 187 RSHHHSGMLGAMPLRSWCVSGLDLHRSARRG 95
R HHH G G SWC S D R RRG
Sbjct: 263 RKHHHHGGGGGAAAESWCSSDSD-RRGWRRG 292
>12_01_0101 -
779047-779298,779459-779711,779857-780005,780033-780281,
780377-780571,780681-780788,780935-781156,781669-781986,
781988-782615,783059-783135,783161-783267,783491-783619,
783763-783820,783902-783984,784458-784539,784617-784693,
784827-784910,784999-785068,785146-785234,785319-786008,
786485-786797
Length = 1410
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 166 CHCDDGFLFDKSGKCVPVDECPDQ 237
C C DGF D KC +DEC ++
Sbjct: 500 CKCPDGFKGDGVHKCEDIDECKER 523
>11_01_0101 -
738305-738556,738723-738977,739306-739554,739649-739843,
739953-740060,740184-740405,740806-741390,741495-741863,
742423-742529,742755-742883,743027-743084,743166-743248,
744115-744196,744274-744350,744477-744560,744649-744718,
744796-744884,744965-745654,746127-746439
Length = 1338
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 166 CHCDDGFLFDKSGKCVPVDECPDQ 237
C C DGF D KC +DEC ++
Sbjct: 500 CKCPDGFKGDGVHKCEDIDECKER 523
>08_02_0325 - 15787791-15788168
Length = 125
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Frame = +1
Query: 13 PARIPDGSRSQPGSVEKDCPE---NSHLTM---NPCAPTCEDPDLTHTSCVAALLPTCHC 174
P +P G + VE C SHL++ P+ + TH S LP CHC
Sbjct: 4 PPVVPHGEVALCAFVESSCHALTVGSHLSLPLHGGLPPSPHREEATHHSLAMGGLPPCHC 63
Query: 175 DDG 183
+ G
Sbjct: 64 EVG 66
>06_03_0473 +
21190878-21191188,21191269-21192355,21192972-21193194,
21193286-21193356,21193385-21193441,21193442-21194056,
21194168-21194237,21194470-21194745,21194916-21195130,
21195224-21195529,21195750-21195813,21195902-21196141,
21196306-21196415
Length = 1214
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 123 WIFTGRRAGVHCQMRILRTIFFNRTWLAARAIR 25
W F+ RR G+ + ++ +F + L+ARA R
Sbjct: 145 WFFSSRRTGMRVRSALMAAVFRKQLRLSARARR 177
>04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476
Length = 676
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = -2
Query: 190 TRSHHHSGMLGAMPLRSWCVSGLDLHRSARRGSLSNENSQDNLFQPNLAGCESHQ 26
+R H +G P W V G LHR+ RRG +NE + LF ++ G H+
Sbjct: 585 SRDVHDNGYHRPSP---WKVLGGVLHRTTRRGEKNNEGAPP-LFSRDVHGNGHHR 635
>03_05_0431 + 24221881-24224586
Length = 901
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +1
Query: 34 SRSQPGSVEKDC-PENSHLTMNPCAPTCEDPDLTHTSCVAALLPTCHCD 177
+ + GS K C P NS L + PC+ C D + C A C D
Sbjct: 345 NHGEVGSGSKTCKPANSRLCL-PCSVGCPDDSYESSPCNATADRVCQFD 392
>10_06_0035 -
9896289-9896390,9897394-9897503,9897587-9897715,
9898734-9898800,9898888-9898970,9899878-9899959,
9900049-9900125,9900206-9900289,9900368-9900437,
9900580-9900668,9900921-9901613,9902833-9903142
Length = 631
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 130 THTSCVAALLPTCHCDDGFLFDKSGKCVPVDECPDQES 243
T ++C + C C GF D KC ++EC ++++
Sbjct: 491 TFSACQESGNGKCQCPAGFRGDGVKKCEDINECKEKKA 528
>04_03_0348 + 14735581-14737071
Length = 496
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = +1
Query: 16 ARIPDGSRSQPGSVEKDCPENSHLTMNPCAPTCEDPDLTHTSCVAALLP-TCHCDDGFL 189
A IPDG +D P + TM C P + T + AA P TC DG +
Sbjct: 72 AAIPDGLPPSDPDATQDIPALCYSTMTTCLPHLDALLATINADAAAAPPVTCVVCDGVM 130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,308,719
Number of Sequences: 37544
Number of extensions: 393783
Number of successful extensions: 1077
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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