Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0365
         (611 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    30   0.016
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    29   0.036
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    29   0.036
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   5.4  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   5.4  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   5.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   7.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   7.2  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   9.5  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 30.3 bits (65), Expect = 0.016
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 525 ERTVRFWFKRFRDGNFDLKN*PR-GRP 602
           ER  + WF +FR G+F LK+  R GRP
Sbjct: 40  ERQCQNWFDKFRSGDFSLKDEKRSGRP 66


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 29.1 bits (62), Expect = 0.036
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = +1

Query: 67  CPENSHLTMNPCAPTCED--PDLTHTS-CVAALLPTCHCDDGFLFDKSGKCVPVDEC 228
           CP N     + C   C+   P++     C+    P C C  G+L +K   CVP  +C
Sbjct: 37  CPSNE--IFSRCDGRCQRFCPNVVPKPLCIKICAPGCVCRLGYLRNKKKVCVPRSKC 91


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 29.1 bits (62), Expect = 0.036
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = +1

Query: 67  CPENSHLTMNPCAPTCED--PDLTHTS-CVAALLPTCHCDDGFLFDKSGKCVPVDEC 228
           CP N     + C   C+   P++     C+    P C C  G+L +K   CVP  +C
Sbjct: 37  CPSNE--IFSRCDGRCQRFCPNVVPKPLCIKICAPGCVCRLGYLRNKKKVCVPRSKC 91


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 386 NNNNRGYSMKLPFYCNRYFELTKNLH 463
           N NN  Y  KL  YCN Y +L  N++
Sbjct: 90  NYNNNNYK-KL--YCNNYKKLYYNIN 112


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 386 NNNNRGYSMKLPFYCNRYFELTKNLH 463
           N NN  Y  KL  YCN Y +L  N++
Sbjct: 90  NYNNNNYK-KL--YCNNYKKLYYNIN 112


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 386 NNNNRGYSMKLPFYCNRYFELTKNLH 463
           N NN  Y  KL  YCN Y +L  N++
Sbjct: 90  NYNNNNYK-KL--YCNNYRKLYYNIN 112


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 344 PPDGKWLPSPMDFSNA 297
           PPD  W P  + F+NA
Sbjct: 104 PPDKVWKPDIVLFNNA 119


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = -2

Query: 118 LHRSARRGSLSNENSQDNLFQPNLAGCESHQGYEQE 11
           L +  R G      +   LF P      S +GYEQE
Sbjct: 292 LLKKERNGPTQTTLNATTLFCPPNLRLTSERGYEQE 327


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = -2

Query: 118 LHRSARRGSLSNENSQDNLFQPNLAGCESHQGYEQE 11
           L +  R G      +   LF P      S +GYEQE
Sbjct: 382 LLKKERNGPTQTTLNATTLFCPPNLRLTSERGYEQE 417


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = -1

Query: 524 NSSPLQTNYHLKKFHSKISNHEDSLSIRSTYYN 426
           N++ L  NY+    ++  +N+ ++   +  YYN
Sbjct: 84  NNNSLSNNYNYNNNYNNYNNNYNTNYKKLQYYN 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,140
Number of Sequences: 438
Number of extensions: 4211
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)