Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0364
(544 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 217 7e-58
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 139 2e-34
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 120 1e-28
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 106 2e-24
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 71 8e-14
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 71 1e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 66 2e-12
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 39 4e-04
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 29 0.34
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 29 0.44
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 28 1.0
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom... 27 1.4
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom... 27 2.4
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces... 26 3.1
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe... 25 5.5
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 25 5.5
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p... 25 5.5
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 25 7.2
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 25 7.2
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 25 9.5
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 25 9.5
SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr 1|... 25 9.5
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 25 9.5
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 217 bits (531), Expect = 7e-58
Identities = 107/188 (56%), Positives = 135/188 (71%), Gaps = 16/188 (8%)
Frame = +1
Query: 28 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKET-AKVGDQSTRRMT-------------KA 165
++D GTGY+KLG+AGN P ++ P+ IA + A G + + + +A
Sbjct: 9 IMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKRA 68
Query: 166 VEDLDFFIGDEAFE--ATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLM 339
EDLDFFIG++A + + GYS+ YP+RHG +E+WD MER+ +Q +FKYLR EPEDH+FL+
Sbjct: 69 TEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLL 128
Query: 340 TEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGD 519
TEPPLN PENRE AEIMFESFN GLYIAVQAVLALAASW S +R+ TG VVDSGD
Sbjct: 129 TEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGD 188
Query: 520 GVTHIVPV 543
GVTHI+PV
Sbjct: 189 GVTHIIPV 196
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 139 bits (337), Expect = 2e-34
Identities = 76/175 (43%), Positives = 103/175 (58%), Gaps = 1/175 (0%)
Frame = +1
Query: 22 ACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEA 201
A VID G+G K GFAG+ P+ + PS VG + + D ++GDEA
Sbjct: 7 ALVIDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHHGIMVGMGQKDSYVGDEA 58
Query: 202 FEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREY 378
G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN NRE
Sbjct: 59 QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREK 118
Query: 379 LAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
+ +I+FE+FN P Y+A+QAVL+L AS ++ TGIV+DSGDGVTH VP+
Sbjct: 119 MTQIIFETFNAPAFYVAIQAVLSLYASGRT--------TGIVLDSGDGVTHTVPI 165
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 120 bits (290), Expect = 1e-28
Identities = 68/173 (39%), Positives = 101/173 (58%), Gaps = 1/173 (0%)
Frame = +1
Query: 28 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFE 207
V+D GTG+ K+G+A + P+F PS + + + ++ T V+ D +GDEA
Sbjct: 7 VLDNGTGFVKVGYAKDNFPRFQFPSIVG-RPILRAEEK-----TGNVQIKDVMVGDEAEA 60
Query: 208 ATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLA 384
VKYP+ +GI+ D++ M + + F+ L+ +P L+TEPP+N NRE +
Sbjct: 61 VRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMC 120
Query: 385 EIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
E MFE + G+Y+A+QAVL+L A S +G+VVDSGDGVTHIVPV
Sbjct: 121 ETMFERYGFGGVYVAIQAVLSLYAQGLS--------SGVVVDSGDGVTHIVPV 165
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 106 bits (255), Expect = 2e-24
Identities = 66/181 (36%), Positives = 101/181 (55%), Gaps = 3/181 (1%)
Frame = +1
Query: 10 FGTRACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 189
F + ID G+G+ K GFAG+ P+ + P+ + + +V S ++ D F+
Sbjct: 7 FDNQPICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQK--------DMFV 58
Query: 190 GDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVF--KYLRAEPEDHHFLMTEPPLNT 360
G EA G ++ P+ GI+++W ME I ++ + L PE+H L+TEPPL
Sbjct: 59 GSEAQNLRGLLKIQRPIERGIIQNWSDMEE-IWSYIYSDQQLNTLPEEHPLLLTEPPLAN 117
Query: 361 PENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVP 540
N+E +AE +E+ NVP L ++Q VLAL AS +RT TGIV++ GDG+TH VP
Sbjct: 118 IRNKEKIAEYFYETLNVPALSFSLQPVLALYAS--ART------TGIVLECGDGLTHSVP 169
Query: 541 V 543
+
Sbjct: 170 I 170
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 71.3 bits (167), Expect = 8e-14
Identities = 57/182 (31%), Positives = 82/182 (45%), Gaps = 12/182 (6%)
Frame = +1
Query: 22 ACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEA 201
A VID G+ +T++GF+G P+ ++PS G+ S R G+E
Sbjct: 13 AIVIDPGSKWTRIGFSGEDIPKCVLPSYC--------GEFSDGRR---------LFGEEY 55
Query: 202 FEAT--GYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENRE 375
+ G +K +R+G VE+WD+ + + L+ P +H L+TEP N PENR
Sbjct: 56 IYKSNPGMEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRV 115
Query: 376 YLAEIMFESFNVPGLYIAVQAVLALAASWK----------SRTSAERTFTGIVVDSGDGV 525
E MFES P Y+A Q A AS K R+S + G V+ G V
Sbjct: 116 KTLETMFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQV 175
Query: 526 TH 531
H
Sbjct: 176 QH 177
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 70.9 bits (166), Expect = 1e-13
Identities = 49/172 (28%), Positives = 79/172 (45%)
Frame = +1
Query: 28 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFE 207
VID G+ +T+ G+AG + P I+PS ++ T R V++L
Sbjct: 14 VIDPGSCWTRFGYAGEESPMTILPSYYGVRSDV------TGRNKYVVDELQIHA-----P 62
Query: 208 ATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAE 387
G VK +GI++DW+ E+ + + L+ P ++ ++TEP N R+ + E
Sbjct: 63 IPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIME 122
Query: 388 IMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
FE +VP Y+ QAV A+ KS T ++VD G + PV
Sbjct: 123 AAFEQLHVPAFYLTKQAVCVAFANSKS--------TALIVDIGSDNASVTPV 166
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 66.5 bits (155), Expect = 2e-12
Identities = 42/172 (24%), Positives = 80/172 (46%)
Frame = +1
Query: 28 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFE 207
VID G+ + G+ G K+P+ + + ++ K+ +R T D +G +
Sbjct: 28 VIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRKL----SRTSTLVGNDTLIEVGSRSI- 82
Query: 208 ATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAE 387
+ P ++ +WDLME+ ++ K L + +H MTEP N R + E
Sbjct: 83 -----ARSPFERNVISNWDLMEQVLDYTFLK-LGIDRMEHPICMTEPLANPTYVRSTMTE 136
Query: 388 IMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
++FE +N P + + + + + K +S GIV++ G+ +H++PV
Sbjct: 137 LLFELYNAPSVAYGIDGLFSFYHNTKPSSS------GIVLNLGNAASHVIPV 182
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 39.1 bits (87), Expect = 4e-04
Identities = 46/182 (25%), Positives = 71/182 (39%), Gaps = 7/182 (3%)
Frame = +1
Query: 19 RACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKA-VEDLDFFIGD 195
+ V+D G + K GFAG K + IP+ + +K G++ A D
Sbjct: 6 KTIVLDNGAYHIKAGFAGGKVVE--IPNCLT---RSKDGNRLFLGNELANCNDFTTLQFR 60
Query: 196 EAFEATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENRE 375
A E GY V + + WDL+ R + + D+ L+T+P P
Sbjct: 61 RAHEK-GYLVHWSTETAV---WDLVMRNVG-----VMEPSMADYSLLLTQPVFTMPSIEH 111
Query: 376 YLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTG------IVVDSGDGVTHIV 537
+++FE F A L + E +TG +V+DSG THI+
Sbjct: 112 NTIQLVFEEFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVIDSGYSFTHII 171
Query: 538 PV 543
PV
Sbjct: 172 PV 173
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 29.5 bits (63), Expect = 0.34
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 395 LSHLMCQAFTLLYKPFLLWLRHGS 466
++ L+C + L+ KPF+LW RH +
Sbjct: 627 IAALICVPWLLIVKPFVLWRRHSN 650
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 29.1 bits (62), Expect = 0.44
Identities = 23/88 (26%), Positives = 35/88 (39%)
Frame = +1
Query: 145 TRRMTKAVEDLDFFIGDEAFEATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPED 324
T K +E LD E + + VK + + L RY VF + + E E
Sbjct: 326 TENFKKVLEVLDHSTRQENYSKSSKKVKKSSSLERIINMVLSNRYDPIIVFCFSKKECEI 385
Query: 325 HHFLMTEPPLNTPENREYLAEIMFESFN 408
+ + LN EN+E + EI + N
Sbjct: 386 NAHQFGKLDLNDTENKELVTEIFDSAIN 413
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 27.9 bits (59), Expect = 1.0
Identities = 18/88 (20%), Positives = 35/88 (39%)
Frame = +1
Query: 73 NKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFEATGYSVKYPVRHGIV 252
N +P I + E+ + + ++ K +E F+G AF+ G + +
Sbjct: 149 NHQPAVSIEESKEAVESTSQSSEISFKLIKVIEGHHTFVGGLAFDPMGQFLASQSFDHTL 208
Query: 253 EDWDLMERYIEQCVFKYLRAEPEDHHFL 336
+ W L +E+ + K P + FL
Sbjct: 209 KVWKLSTFGVEKSIAKPFEQMPTGNRFL 236
>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 27.5 bits (58), Expect = 1.4
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = +1
Query: 328 HFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVV 507
+F + L+ P R+YL ++ I+V +L L WKS TSA +G V+
Sbjct: 109 YFTPAQAFLSQPIIRQYLTLLLICLVETTVYQISVVLLLCLTMGWKSWTSA----SGAVI 164
Query: 508 DSGDGVTHIVPV 543
S T ++PV
Sbjct: 165 LSSS--TRMLPV 174
>SPAC1805.16c |||purine nucleoside phosphorylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 26.6 bits (56), Expect = 2.4
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +1
Query: 307 RAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAAS 459
+A+ + HH TEP + E REY+ E + E + P + I + L AS
Sbjct: 9 QAKQQPHH---TEPYIKALEAREYIIEQVPEELSKPKVAIICGSGLGTLAS 56
>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 26.2 bits (55), Expect = 3.1
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +2
Query: 8 NSARGLVLSMSAPGILNWVLPV 73
N+ RG++L+ + GI+ WV+ +
Sbjct: 293 NAPRGIILTAAIGGIMGWVMQI 314
>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -3
Query: 152 LRVL*SPTFAVSFIAMVDGII-NCGSLLPAKPSLVY 48
++++ S F + F+A + ++ N GSL+ AKP + Y
Sbjct: 191 IKLIDSKDFVLGFLAGLSVLLLNTGSLITAKPLISY 226
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +1
Query: 325 HHFLMTEPPLNTPENREYLAEIMFESFNVPGL 420
H FL+T TP+ L I+F PGL
Sbjct: 618 HSFLLTYKTFTTPQELFTLLVILFHELPPPGL 649
>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 5.5
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +1
Query: 334 LMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDS 513
++++ P TPE E+L ++ +FN + AS + T F +V D
Sbjct: 14 VISDAPKPTPEKGEFLGRVIRVAFN------PIDWKTLYNASIEKGTVGGTDFVAVVEDV 67
Query: 514 GDGV 525
G+GV
Sbjct: 68 GEGV 71
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 25.0 bits (52), Expect = 7.2
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -2
Query: 192 TDEKIQIFDSLSHPPSTLIANFCSFFYRYG*WNNKLWFLVTGKTQFSIPGADIDNTS 22
TDE + DSLSHP +++ G NN + T +T+ +D TS
Sbjct: 271 TDESASLEDSLSHPTKSILDQLADKMEVDG-LNNNSNYSATPRTRVVNGQIVLDETS 326
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 178 DFFIGDEAFEATGYSVKYPVRHGI-VEDWDLMERYIEQC 291
D F+G + +EA V +P +G+ ++L Y++ C
Sbjct: 683 DVFVGYKYYEAVEREVLFPFGYGLSYTTFELSNLYLKNC 721
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 316 PEDHHFLMTEP-PLNTPENREYLAEIMFESFN 408
PE+ F + E PL+ E + + E++FE++N
Sbjct: 174 PEEDFFRVLETAPLHAEEVSKKMKELLFETYN 205
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 330 FLNDRASAQHSRKQRIFSRNHV 395
F+ND S H R+Q+ +R H+
Sbjct: 335 FVNDPNSTSHDRRQKRPTRRHI 356
>SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 282
Score = 24.6 bits (51), Expect = 9.5
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +1
Query: 259 WDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYL 381
W LME + F Y A + HF T P L NR+YL
Sbjct: 49 WVLME-LVAPLTFLY--AIRNNRHFESTLPSLGDGSNRDYL 86
>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = -3
Query: 128 FAVSFIAMVDGIINCGSLLPAKPSLVYPVPTSITQALVPNS 6
F + +++ + ++ L+P+ PS+ +P +I L P S
Sbjct: 93 FTPNLLSLAERNVHVPFLIPSFPSITFPNHYTIVTGLYPES 133
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,349,394
Number of Sequences: 5004
Number of extensions: 48554
Number of successful extensions: 154
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -