Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0364
(544 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 131 4e-43
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 140 5e-34
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 140 5e-34
SB_56| Best HMM Match : Actin (HMM E-Value=0) 140 5e-34
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 140 5e-34
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 139 1e-33
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 122 1e-28
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 3e-21
SB_54| Best HMM Match : Actin (HMM E-Value=0) 82 2e-16
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 75 3e-14
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 75 4e-14
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 63 1e-10
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 56 2e-08
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 36 0.028
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 36 0.028
SB_15553| Best HMM Match : SCP (HMM E-Value=1.1e-16) 30 1.1
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 29 1.9
SB_32741| Best HMM Match : Filament (HMM E-Value=0.39) 29 2.5
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1) 27 7.5
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 131 bits (316), Expect(2) = 4e-43
Identities = 60/95 (63%), Positives = 72/95 (75%)
Frame = +1
Query: 55 KLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFEATGYSVKYP 234
K G+ K Q TIAIKE+AKVG++S R K VEDLDFFIGDEA + Y+ K+P
Sbjct: 242 KRGYDLAKAVQSNTQGTIAIKESAKVGNKSLGRSAKGVEDLDFFIGDEAIDKPSYATKWP 301
Query: 235 VRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLM 339
+RH IVEDWDLMER+ EQC+FKYLRAEPEDH+FL+
Sbjct: 302 IRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
Score = 61.3 bits (142), Expect(2) = 4e-43
Identities = 27/36 (75%), Positives = 30/36 (83%)
Frame = +1
Query: 436 AVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
AVLALAASW SR ERT TG V+DSGDGVTH++PV
Sbjct: 337 AVLALAASWTSRQVGERTLTGCVIDSGDGVTHVIPV 372
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 140 bits (340), Expect = 5e-34
Identities = 76/175 (43%), Positives = 105/175 (60%), Gaps = 1/175 (0%)
Frame = +1
Query: 22 ACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEA 201
A V+D G+G K GFAG+ P+ + PS VG + + + D ++GDEA
Sbjct: 8 ALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGDEA 59
Query: 202 FEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREY 378
G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN NRE
Sbjct: 60 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 119
Query: 379 LAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
+ +IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DSGDGVTH VP+
Sbjct: 120 MTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVMDSGDGVTHTVPI 166
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 140 bits (340), Expect = 5e-34
Identities = 76/175 (43%), Positives = 105/175 (60%), Gaps = 1/175 (0%)
Frame = +1
Query: 22 ACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEA 201
A V+D G+G K GFAG+ P+ + PS VG + + + D ++GDEA
Sbjct: 7 ALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGDEA 58
Query: 202 FEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREY 378
G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN NRE
Sbjct: 59 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 118
Query: 379 LAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
+ +IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DSGDGVTH VP+
Sbjct: 119 MTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVMDSGDGVTHTVPI 165
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 140 bits (340), Expect = 5e-34
Identities = 76/175 (43%), Positives = 105/175 (60%), Gaps = 1/175 (0%)
Frame = +1
Query: 22 ACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEA 201
A V+D G+G K GFAG+ P+ + PS VG + + + D ++GDEA
Sbjct: 7 ALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGDEA 58
Query: 202 FEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREY 378
G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN NRE
Sbjct: 59 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 118
Query: 379 LAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
+ +IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DSGDGVTH VP+
Sbjct: 119 MTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVMDSGDGVTHTVPI 165
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 140 bits (340), Expect = 5e-34
Identities = 76/175 (43%), Positives = 105/175 (60%), Gaps = 1/175 (0%)
Frame = +1
Query: 22 ACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEA 201
A V+D G+G K GFAG+ P+ + PS VG + + + D ++GDEA
Sbjct: 8 ALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGDEA 59
Query: 202 FEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREY 378
G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN NRE
Sbjct: 60 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 119
Query: 379 LAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
+ +IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DSGDGVTH VP+
Sbjct: 120 MTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVMDSGDGVTHTVPI 166
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 139 bits (337), Expect = 1e-33
Identities = 76/175 (43%), Positives = 105/175 (60%), Gaps = 1/175 (0%)
Frame = +1
Query: 22 ACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEA 201
A VID G+G K GFAG+ P+ + PS VG + + + D ++GDEA
Sbjct: 8 ALVIDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGDEA 59
Query: 202 FEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREY 378
G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN NRE
Sbjct: 60 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 119
Query: 379 LAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
+ +IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DSGDGV+H VP+
Sbjct: 120 MTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVMDSGDGVSHTVPI 166
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 122 bits (295), Expect = 1e-28
Identities = 74/183 (40%), Positives = 103/183 (56%), Gaps = 6/183 (3%)
Frame = +1
Query: 13 GTRACVIDVGTGYTKLGFAGNKEPQFIIPSTIA---IKETAKVGDQSTRRMTKAVEDLDF 183
G V D GTG+ K G+AG+ P I PS + I+ + KVGD +E D
Sbjct: 5 GNSVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGD---------IEVKDL 55
Query: 184 FIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVF--KYLRAEPEDHHFLMTEPPL 354
+GDEA + V YP+ +GIV +WD M +++ F + +P + L+TEPPL
Sbjct: 56 MVGDEASQLRYMLEVNYPMDNGIVRNWDDM-KHVWDYTFGESKMNIDPRNTKVLLTEPPL 114
Query: 355 NTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHI 534
N +NRE + E+MFE++ G+YIA+QAVL L A+ TG+V+DSGDGVTHI
Sbjct: 115 NPMKNREKMIEVMFENYQFEGVYIAIQAVLTL--------YAQGLLTGVVIDSGDGVTHI 166
Query: 535 VPV 543
PV
Sbjct: 167 CPV 169
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 61.7 bits (143), Expect(2) = 3e-21
Identities = 31/59 (52%), Positives = 43/59 (72%)
Frame = +1
Query: 367 NREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
N + + +IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DSGDGVTH VP+
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVMDSGDGVTHTVPI 128
Score = 57.6 bits (133), Expect(2) = 3e-21
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = +1
Query: 22 ACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEA 201
A VID G+G K GFAG+ P+ + PS VG + + + D ++GDEA
Sbjct: 7 ALVIDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGDEA 58
Query: 202 FEATG-YSVKYPVRHGIVEDWDLMER 276
G ++KYP+ HGIV +WD ME+
Sbjct: 59 QSKRGILTLKYPIEHGIVTNWDDMEK 84
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 82.2 bits (194), Expect = 2e-16
Identities = 44/83 (53%), Positives = 54/83 (65%)
Frame = +1
Query: 295 FKYLRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRT 474
F LR ED L+TE PLN NRE + ++MFESFNVP +Y+AVQAV+AL AS ++
Sbjct: 2136 FDQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALYASGRT-- 2193
Query: 475 SAERTFTGIVVDSGDGVTHIVPV 543
TG V D GDGV+H VPV
Sbjct: 2194 ------TGTVFDCGDGVSHTVPV 2210
Score = 28.3 bits (60), Expect = 4.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +1
Query: 4 QEFGTRACVIDVGTGYTKLGFAGNKEPQFIIPSTI 108
++ G VID G+G+ K G + ++ P+ + P+ +
Sbjct: 2090 EQNGGTVVVIDNGSGFCKAGLSTDESPRVVFPAIV 2124
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 75.4 bits (177), Expect = 3e-14
Identities = 37/73 (50%), Positives = 52/73 (71%)
Frame = +1
Query: 325 HHFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIV 504
H L+TE PLN NRE AE+ FE+FNVP L+I++QAVL+L A+ ++ TG+V
Sbjct: 127 HPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRT--------TGVV 178
Query: 505 VDSGDGVTHIVPV 543
+D+GDGV+H VP+
Sbjct: 179 LDAGDGVSHSVPI 191
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 74.9 bits (176), Expect = 4e-14
Identities = 38/104 (36%), Positives = 59/104 (56%)
Frame = +1
Query: 232 PVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNV 411
P++ G++EDWDL E+ ++ K ++++ H LM+E NT RE L E+MFE +NV
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 412 PGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
P ++ +VL A+ +S G+V+DSG T VPV
Sbjct: 63 PAFFLCKNSVLTAFANGRS--------NGLVIDSGATQTSAVPV 98
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 63.3 bits (147), Expect = 1e-10
Identities = 28/39 (71%), Positives = 32/39 (82%)
Frame = +1
Query: 427 AVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
A +AVLALAASW SR ERT TG V+DSGDGVTH++PV
Sbjct: 40 ATKAVLALAASWTSRQVGERTLTGCVIDSGDGVTHVIPV 78
Score = 56.0 bits (129), Expect = 2e-08
Identities = 26/41 (63%), Positives = 31/41 (75%)
Frame = +1
Query: 106 IAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFEATGYSVK 228
IAIKE+AKVG++S R K VEDLDFFIGDEA + Y+ K
Sbjct: 2 IAIKESAKVGNKSLGRSAKGVEDLDFFIGDEAIDKPSYATK 42
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 56.0 bits (129), Expect = 2e-08
Identities = 28/52 (53%), Positives = 38/52 (73%)
Frame = +1
Query: 388 IMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
IMFE+FN P +Y+A+QAVL+L AS ++ TG+V DSGDGV+H VP+
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRT--------TGVVFDSGDGVSHNVPI 44
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 35.5 bits (78), Expect = 0.028
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = +1
Query: 19 RACVIDVGTGYTKLGFAGNKEPQFIIPSTI 108
RA V+D G G +K+GFAG++ P+ I P+ +
Sbjct: 701 RAIVLDNGCGISKIGFAGDRVPRIIQPAVV 730
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 35.5 bits (78), Expect = 0.028
Identities = 50/182 (27%), Positives = 73/182 (40%), Gaps = 3/182 (1%)
Frame = +1
Query: 7 EFGTRACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFF 186
+F V+D G K+GFA N+ P+ I P+ I AK S RR F
Sbjct: 230 QFKMATLVLDCGACSQKIGFASNQAPRSI-PNAIF---KAK----SERRK--------LF 273
Query: 187 IGDEAFEATGYSVKY---PVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLN 357
IGD+ E YS + P + G + +WD +E+ ++ Y
Sbjct: 274 IGDQIEECKDYSALFYVLPFQKGFLVNWD-----VEKQIWDYT---------------FG 313
Query: 358 TPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIV 537
+ + EI+FE +N L A L+ + S +VVD+G THIV
Sbjct: 314 KEGLEDAMDEILFEEYNFKALSRTTAAQLSAYKCHQDMVSKNPVC--LVVDTGYSFTHIV 371
Query: 538 PV 543
PV
Sbjct: 372 PV 373
>SB_15553| Best HMM Match : SCP (HMM E-Value=1.1e-16)
Length = 141
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 340 TEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLA 447
T PP N P E +A++M++S + G+ I+ V+A
Sbjct: 88 TNPPANAPAGTEEVAQLMWQSTSAVGVGISGNVVVA 123
>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1913
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = -2
Query: 372 SVFWSVERRLGH*EMMIFGFRTEILKHALFDVPFH*IPVFYDTVAHRILYRVSCGFKSF 196
SVF +R+ I+ ++I H DVP +PVF D + R Y ++ G K +
Sbjct: 70 SVFRRPRKRVDSFSHAIYEAASKIFLHLKGDVPSSQLPVFDDDLERRRAYSMAFGAKRY 128
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 28 VIDVGTGYTKLGFAGNKEPQFIIPSTI 108
VIDVG+ K+GFAG+ P+ + P +
Sbjct: 1360 VIDVGSHMWKVGFAGDDAPKGVFPPIV 1386
>SB_32741| Best HMM Match : Filament (HMM E-Value=0.39)
Length = 1814
Score = 29.1 bits (62), Expect = 2.5
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Frame = +1
Query: 40 GTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFEATGY 219
GT KL F E I + + + Q + +A+ +L+ + F T Y
Sbjct: 1230 GTTLEKLTFGSVLESADQIVTHADVLKELNSRAQGEVSIREALRELELWGAGAVFSLTSY 1289
Query: 220 SVKYPVRHGIVEDWDLMERYI--EQCVFKYLRAEP 318
S + I++DW + + QC+ + L+ P
Sbjct: 1290 SDSHEKELSIIKDWKELVNQVGDNQCLLQSLKDSP 1324
>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6753
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 231 SCAPRYRRRLGFNGKVHRTVRV*VSPCGTRRSSFLN 338
+C PRYR GFN + RTV V PC S ++
Sbjct: 2331 TCTPRYR---GFNCTILRTVCTDVQPCDKGNCSMIS 2363
>SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1325
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -2
Query: 255 FYDTVAHRILYRVSCGFKSFIT--DEKIQIFDSLSHPPSTLIA 133
F T I Y + C F +F D K IFD SHP +++A
Sbjct: 1192 FDSTDYQPIEYNIDCKFDTFSATIDVKKTIFDLQSHPTDSIVA 1234
>SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1)
Length = 890
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 205 EATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHF 333
E + S+ R G++E W +M Y Q + R ED HF
Sbjct: 497 ETSSDSIPRSPRRGMLEFWLVMRIYDNQVDIYFHRRNSEDWHF 539
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -3
Query: 98 GIINCGSLLPAKPSLVYPVPTSITQALVP 12
G N + +PAKPSL P P S T + VP
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKTPSSVP 568
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,813,195
Number of Sequences: 59808
Number of extensions: 369933
Number of successful extensions: 938
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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