Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0364
(544 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 283 6e-77
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 141 3e-34
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 141 3e-34
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 141 3e-34
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 141 3e-34
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 141 3e-34
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 141 3e-34
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 141 3e-34
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 140 4e-34
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 138 3e-33
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 130 6e-31
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 126 1e-29
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 124 3e-29
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 115 3e-26
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 86 1e-17
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 57 7e-09
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 57 7e-09
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 57 7e-09
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 54 5e-08
AF047661-5|AAU05544.1| 822|Caenorhabditis elegans Hypothetical ... 28 5.0
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z29094-1|CAA82338.1| 147|Caenorhabditis elegans Hypothetical pr... 27 6.6
AF303257-1|AAG50215.1| 147|Caenorhabditis elegans G10 protein h... 27 6.6
Z81133-6|CAJ85766.1| 398|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical pr... 27 8.7
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 283 bits (694), Expect = 6e-77
Identities = 134/180 (74%), Positives = 150/180 (83%), Gaps = 6/180 (3%)
Frame = +1
Query: 22 ACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKE-TAKVGDQSTR---RMTKAVEDLDFFI 189
ACVID GTGYTKLG+AGN EPQFIIPS IA+K+ A Q+ R R+ ++DLDFFI
Sbjct: 8 ACVIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNSQAMRWNNRVGAGIDDLDFFI 67
Query: 190 GDEAFE--ATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTP 363
GDEA AT Y+VKYP+RHGIVEDWDLMERY EQC+FKYLRAEPEDH FL+TEPPLNTP
Sbjct: 68 GDEALSPAATNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLLTEPPLNTP 127
Query: 364 ENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
ENREY AEIMFESFNVPGLYIAVQAVLAL ASW SR + ER+ TG+V+DSGDGVTH +PV
Sbjct: 128 ENREYTAEIMFESFNVPGLYIAVQAVLALTASWNSREANERSLTGLVIDSGDGVTHCIPV 187
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 141 bits (342), Expect = 3e-34
Identities = 76/175 (43%), Positives = 105/175 (60%), Gaps = 1/175 (0%)
Frame = +1
Query: 22 ACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEA 201
A V+D G+G K GFAG+ P+ + PS VG + + + D ++GDEA
Sbjct: 8 ALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGDEA 59
Query: 202 FEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREY 378
G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN NRE
Sbjct: 60 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 119
Query: 379 LAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
+ +IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DSGDGVTH VP+
Sbjct: 120 MTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVTHTVPI 166
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 141 bits (341), Expect = 3e-34
Identities = 75/175 (42%), Positives = 105/175 (60%), Gaps = 1/175 (0%)
Frame = +1
Query: 22 ACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEA 201
A V+D G+G K GFAG+ P+ + PS VG + + + D ++GDEA
Sbjct: 8 ALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGDEA 59
Query: 202 FEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREY 378
G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN NRE
Sbjct: 60 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 119
Query: 379 LAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
+ +IMFE+FN P +Y+A+QAVL+L AS ++ TG+V+DSGDGVTH VP+
Sbjct: 120 MTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGVVLDSGDGVTHTVPI 166
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 141 bits (341), Expect = 3e-34
Identities = 75/175 (42%), Positives = 105/175 (60%), Gaps = 1/175 (0%)
Frame = +1
Query: 22 ACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEA 201
A V+D G+G K GFAG+ P+ + PS VG + + + D ++GDEA
Sbjct: 8 ALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGDEA 59
Query: 202 FEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREY 378
G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN NRE
Sbjct: 60 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 119
Query: 379 LAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
+ +IMFE+FN P +Y+A+QAVL+L AS ++ TG+V+DSGDGVTH VP+
Sbjct: 120 MTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGVVLDSGDGVTHTVPI 166
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 141 bits (341), Expect = 3e-34
Identities = 75/175 (42%), Positives = 105/175 (60%), Gaps = 1/175 (0%)
Frame = +1
Query: 22 ACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEA 201
A V+D G+G K GFAG+ P+ + PS VG + + + D ++GDEA
Sbjct: 8 ALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGDEA 59
Query: 202 FEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREY 378
G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN NRE
Sbjct: 60 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 119
Query: 379 LAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
+ +IMFE+FN P +Y+A+QAVL+L AS ++ TG+V+DSGDGVTH VP+
Sbjct: 120 MTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGVVLDSGDGVTHTVPI 166
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 141 bits (341), Expect = 3e-34
Identities = 75/175 (42%), Positives = 105/175 (60%), Gaps = 1/175 (0%)
Frame = +1
Query: 22 ACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEA 201
A V+D G+G K GFAG+ P+ + PS VG + + + D ++GDEA
Sbjct: 8 ALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGDEA 59
Query: 202 FEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREY 378
G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN NRE
Sbjct: 60 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 119
Query: 379 LAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
+ +IMFE+FN P +Y+A+QAVL+L AS ++ TG+V+DSGDGVTH VP+
Sbjct: 120 MTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGVVLDSGDGVTHTVPI 166
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 141 bits (341), Expect = 3e-34
Identities = 75/175 (42%), Positives = 105/175 (60%), Gaps = 1/175 (0%)
Frame = +1
Query: 22 ACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEA 201
A V+D G+G K GFAG+ P+ + PS VG + + + D ++GDEA
Sbjct: 8 ALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGDEA 59
Query: 202 FEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREY 378
G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN NRE
Sbjct: 60 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 119
Query: 379 LAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
+ +IMFE+FN P +Y+A+QAVL+L AS ++ TG+V+DSGDGVTH VP+
Sbjct: 120 MTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGVVLDSGDGVTHTVPI 166
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 141 bits (341), Expect = 3e-34
Identities = 75/175 (42%), Positives = 105/175 (60%), Gaps = 1/175 (0%)
Frame = +1
Query: 22 ACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEA 201
A V+D G+G K GFAG+ P+ + PS VG + + + D ++GDEA
Sbjct: 8 ALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGDEA 59
Query: 202 FEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREY 378
G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN NRE
Sbjct: 60 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 119
Query: 379 LAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
+ +IMFE+FN P +Y+A+QAVL+L AS ++ TG+V+DSGDGVTH VP+
Sbjct: 120 MTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGVVLDSGDGVTHTVPI 166
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 140 bits (340), Expect = 4e-34
Identities = 75/175 (42%), Positives = 105/175 (60%), Gaps = 1/175 (0%)
Frame = +1
Query: 22 ACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEA 201
A ++D G+G K GFAG+ P+ + PS VG + + + D ++GDEA
Sbjct: 8 ALILDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGDEA 59
Query: 202 FEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREY 378
G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN NRE
Sbjct: 60 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 119
Query: 379 LAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
+ +IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DSGDGVTH VP+
Sbjct: 120 MTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVTHTVPI 166
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 138 bits (333), Expect = 3e-33
Identities = 74/175 (42%), Positives = 104/175 (59%), Gaps = 1/175 (0%)
Frame = +1
Query: 22 ACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEA 201
A V+D G+G K GFAG+ P+ + PS VG + + + D ++GDEA
Sbjct: 7 ALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGDEA 58
Query: 202 FEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREY 378
G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN NRE
Sbjct: 59 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKSNREK 118
Query: 379 LAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
+ +IMFE+FN P +Y+ +QAVL+L AS ++ TGIV+D+GDGVTH VP+
Sbjct: 119 MTQIMFETFNTPAMYVNIQAVLSLYASGRT--------TGIVLDTGDGVTHTVPI 165
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 130 bits (314), Expect = 6e-31
Identities = 69/164 (42%), Positives = 98/164 (59%), Gaps = 1/164 (0%)
Frame = +1
Query: 55 KLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFEATGY-SVKY 231
+ GFAG+ P+ + PS VG + + + D ++GDEA G ++KY
Sbjct: 5 RAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 56
Query: 232 PVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNV 411
P+ HGIV +WD ME+ + LR PE+H L+TE PLN NRE + +IMFE+FN
Sbjct: 57 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 116
Query: 412 PGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
P +Y+A+QAVL+L AS ++ TG+V+DSGDGVTH VP+
Sbjct: 117 PAMYVAIQAVLSLYASGRT--------TGVVLDSGDGVTHTVPI 152
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 126 bits (303), Expect = 1e-29
Identities = 75/174 (43%), Positives = 104/174 (59%), Gaps = 2/174 (1%)
Frame = +1
Query: 28 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFE 207
VID G+G K GFAG ++P+ ++ VG R+ D D FIG +A
Sbjct: 12 VIDNGSGVIKAGFAGEQQPK--------VRFANFVGRPKYHRVMAGGLDGDIFIGPKAES 63
Query: 208 ATG-YSVKYPVRHGIVEDWDLMERYIEQCVFK-YLRAEPEDHHFLMTEPPLNTPENREYL 381
G +S++YP+ HGIV +W ME+ E + L+ PE+H L+T+ PLN +NRE
Sbjct: 64 NRGLFSIEYPMEHGIVNNWSDMEKIWEYIFGQDQLKIFPEEHPVLLTDAPLNPLKNRERS 123
Query: 382 AEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
AEI FE+FNVP LYI +QAVL+L A+ ++ TG+V+DSGDGVTH VP+
Sbjct: 124 AEIFFETFNVPALYIQMQAVLSLYATGRT--------TGVVLDSGDGVTHAVPI 169
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 124 bits (300), Expect = 3e-29
Identities = 60/123 (48%), Positives = 82/123 (66%), Gaps = 1/123 (0%)
Frame = +1
Query: 178 DFFIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPL 354
D ++GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PL
Sbjct: 8 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 67
Query: 355 NTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHI 534
N NRE + +IMFE+FN P +Y+A+QAVL+L AS ++ TG+V+DSGDGVTH
Sbjct: 68 NPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGVVLDSGDGVTHT 119
Query: 535 VPV 543
VP+
Sbjct: 120 VPI 122
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 115 bits (276), Expect = 3e-26
Identities = 68/182 (37%), Positives = 99/182 (54%), Gaps = 5/182 (2%)
Frame = +1
Query: 13 GTRACVIDVGTGYTKLGFAGNKEPQFIIPSTIA---IKETAKVGDQSTRRMTKAVEDLDF 183
G + V+D GTG+ K G+AG P I PS + ++ T +VG+ +E D
Sbjct: 5 GRKVIVVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGN---------IEIKDL 55
Query: 184 FIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVF-KYLRAEPEDHHFLMTEPPLN 357
+G+E + + YP+ +GIV +WD M + + L +P++ L+TEPPLN
Sbjct: 56 MVGEECSQLRQMLDINYPMDNGIVRNWDDMAHVWDHTFGPEKLDIDPKECKLLLTEPPLN 115
Query: 358 TPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIV 537
NRE + ++MFE + +Y+AVQAVL L A+ TG+VVDSGDGVTHI
Sbjct: 116 PNSNREKMFQVMFEQYGFNSIYVAVQAVLTL--------YAQGLLTGVVVDSGDGVTHIC 167
Query: 538 PV 543
PV
Sbjct: 168 PV 169
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 86.2 bits (204), Expect = 1e-17
Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 10/182 (5%)
Frame = +1
Query: 28 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETA--------KVGDQSTRRMTKAVEDLDF 183
V D G+ ++GFAG + P+ IPS IA++E + ++ + + +F
Sbjct: 15 VFDAGSQSFRVGFAGEEYPKGDIPSYIAVQEALPDDTIEKQEAMEEGDNSKVQTKREKNF 74
Query: 184 FIGDEAF--EATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLN 357
FIG +++ ++ G++EDW+L E+ +E L + P +H L +E N
Sbjct: 75 FIGTTKIIVPRARTNMESFMKEGLIEDWELFEKIVEHSYENILYSNPSEHPVLFSESSWN 134
Query: 358 TPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIV 537
RE L EIMFE F VP Y++ VL+ A ++ G++VDSG T +V
Sbjct: 135 DRARREKLTEIMFEKFQVPAYYLSKNVVLSCFAQGRTH--------GLMVDSGATQTSVV 186
Query: 538 PV 543
PV
Sbjct: 187 PV 188
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 57.2 bits (132), Expect = 7e-09
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = +1
Query: 22 ACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEA 201
A V+D G+G K GFAG+ P+ + PS VG + + + D ++GDEA
Sbjct: 8 ALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGDEA 59
Query: 202 FEATG-YSVKYPVRHGIVEDWDLMER 276
G ++KYP+ HGIV +WD ME+
Sbjct: 60 QSKRGILTLKYPIEHGIVTNWDDMEK 85
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 57.2 bits (132), Expect = 7e-09
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = +1
Query: 22 ACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEA 201
A V+D G+G K GFAG+ P+ + PS VG + + + D ++GDEA
Sbjct: 8 ALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGDEA 59
Query: 202 FEATG-YSVKYPVRHGIVEDWDLMER 276
G ++KYP+ HGIV +WD ME+
Sbjct: 60 QSKRGILTLKYPIEHGIVTNWDDMEK 85
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 57.2 bits (132), Expect = 7e-09
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = +1
Query: 22 ACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEA 201
A V+D G+G K GFAG+ P+ + PS VG + + + D ++GDEA
Sbjct: 8 ALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGDEA 59
Query: 202 FEATG-YSVKYPVRHGIVEDWDLMER 276
G ++KYP+ HGIV +WD ME+
Sbjct: 60 QSKRGILTLKYPIEHGIVTNWDDMEK 85
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 54.4 bits (125), Expect = 5e-08
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +1
Query: 22 ACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEA 201
A V+D G+G K GFAG+ P+ + PS VG + + + D ++GDEA
Sbjct: 8 ALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGDEA 59
Query: 202 FEATG-YSVKYPVRHGIVEDWDLM 270
G ++KYP+ HGIV +WD M
Sbjct: 60 QSKRGILTLKYPIEHGIVTNWDDM 83
>AF047661-5|AAU05544.1| 822|Caenorhabditis elegans Hypothetical
protein M70.4 protein.
Length = 822
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 328 DDLRVPHGDT*TRTVRCTFPLNPSLLRYRGAQDTLQSI 215
+DL +P G+ + +F L SL ++ G +DT S+
Sbjct: 418 EDLNIPQGNNWANPIHTSFCLPKSLHKWAGRRDTSSSM 455
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
protein T01D3.3b protein.
Length = 1011
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = +3
Query: 408 CARPLHCCTSRSCF-GCVMEVTYV 476
CA PL C S CF GCV YV
Sbjct: 582 CANPLGRCGSGQCFSGCVCRQPYV 605
>Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical
protein T01D3.3a protein.
Length = 802
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = +3
Query: 408 CARPLHCCTSRSCF-GCVMEVTYV 476
CA PL C S CF GCV YV
Sbjct: 373 CANPLGRCGSGQCFSGCVCRQPYV 396
>Z29094-1|CAA82338.1| 147|Caenorhabditis elegans Hypothetical
protein C07A9.2 protein.
Length = 147
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 235 VRHGIVEDWDLMERYIEQCVFKYLRAEPEDH 327
VR E WDL+E +EQ K AE E H
Sbjct: 10 VRKSPPEGWDLIEPTLEQFEAKMREAETEPH 40
>AF303257-1|AAG50215.1| 147|Caenorhabditis elegans G10 protein
homolog protein.
Length = 147
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 235 VRHGIVEDWDLMERYIEQCVFKYLRAEPEDH 327
VR E WDL+E +EQ K AE E H
Sbjct: 10 VRKSPPEGWDLIEPTLEQFEAKMREAETEPH 40
>Z81133-6|CAJ85766.1| 398|Caenorhabditis elegans Hypothetical
protein T28B8.3b protein.
Length = 398
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = -2
Query: 288 LFDVPFH*IPVFYDTVAHRILYRVSCGFKSFITDEKIQIFDSLSH 154
L ++P IP DT+ H+I+ ++ F+ D+KI I SLSH
Sbjct: 55 LINIPSRFIPDSLDTIIHKIIDKIP--DLKFMEDQKI-IRASLSH 96
>Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical protein
T28B8.3a protein.
Length = 1838
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = -2
Query: 288 LFDVPFH*IPVFYDTVAHRILYRVSCGFKSFITDEKIQIFDSLSH 154
L ++P IP DT+ H+I+ ++ F+ D+KI I SLSH
Sbjct: 1495 LINIPSRFIPDSLDTIIHKIIDKIP--DLKFMEDQKI-IRASLSH 1536
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,952,541
Number of Sequences: 27780
Number of extensions: 272243
Number of successful extensions: 705
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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