Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0364
(544 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 208 1e-54
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 144 4e-35
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 140 5e-34
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 139 1e-33
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 139 1e-33
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 138 2e-33
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 138 2e-33
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 138 2e-33
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 138 2e-33
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 138 2e-33
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 138 2e-33
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 121 3e-28
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 111 4e-25
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 106 8e-24
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 96 1e-20
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 71 7e-13
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 63 1e-10
At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identica... 62 2e-10
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 61 4e-10
At3g55120.1 68416.m06121 chalcone-flavanone isomerase / chalcone... 29 1.5
At5g58610.1 68418.m07345 PHD finger transcription factor, putative 27 6.1
At4g12870.1 68417.m02015 gamma interferon responsive lysosomal t... 27 6.1
At3g45800.1 68416.m04957 hypothetical protein 27 8.1
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 208 bits (509), Expect = 1e-54
Identities = 101/185 (54%), Positives = 133/185 (71%), Gaps = 11/185 (5%)
Frame = +1
Query: 22 ACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVE-------DLD 180
A VID GTGYTK+GFAGN EP FI+P+ +A+ E+ +S+ + T + DLD
Sbjct: 8 AIVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSKSSSKATWQTQHNAGVAADLD 67
Query: 181 FFIGDEAF----EATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEP 348
F+IGDEA ++ +++ YP+ HG VEDWD MERY +QC+F YLR +PEDH+FL+TE
Sbjct: 68 FYIGDEALAKSRSSSTHNLHYPIEHGQVEDWDAMERYWQQCIFNYLRCDPEDHYFLLTES 127
Query: 349 PLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVT 528
PL PE+REY EI+FE+FNVPGLYIAV +VLALAA + T+++ TG+VVD GDG T
Sbjct: 128 PLTPPESREYTGEILFETFNVPGLYIAVNSVLALAAGY---TTSKCEMTGVVVDVGDGAT 184
Query: 529 HIVPV 543
H+VPV
Sbjct: 185 HVVPV 189
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 144 bits (348), Expect = 4e-35
Identities = 78/175 (44%), Positives = 105/175 (60%), Gaps = 1/175 (0%)
Frame = +1
Query: 22 ACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEA 201
A V D GTG K GFAG+ P+ + PS VG R + +++ D F+GDEA
Sbjct: 10 AIVCDNGTGMVKAGFAGDDAPRAVFPSV--------VGRPRHRGVMVGMDEKDTFVGDEA 61
Query: 202 FEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREY 378
G S+KYP+ HG+V +WD ME+ + LR EPE+H L+TE PLN NRE
Sbjct: 62 QARRGILSLKYPIEHGVVSNWDDMEKIWHHTFYNELRLEPEEHPILLTEAPLNPKVNREK 121
Query: 379 LAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
+ +IMFESF P +YI +QAVL+L +S ++ TGIV+DSGDGV+H VP+
Sbjct: 122 MTQIMFESFAFPSMYIGIQAVLSLYSSGRT--------TGIVLDSGDGVSHTVPI 168
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 140 bits (339), Expect = 5e-34
Identities = 76/173 (43%), Positives = 103/173 (59%), Gaps = 1/173 (0%)
Frame = +1
Query: 28 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFE 207
V D GTG K GFAG+ P+ + PS VG + + D ++GDEA
Sbjct: 11 VCDNGTGMVKAGFAGDDAPRAVFPSI--------VGRPRHTGVMVGMGQKDAYVGDEAQS 62
Query: 208 ATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLA 384
G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN NRE +
Sbjct: 63 KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
Query: 385 EIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
+IMFE+FNVP +Y+A+QAVL+L AS ++ TGIV+DSGDGV+H VP+
Sbjct: 123 QIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPI 167
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 139 bits (336), Expect = 1e-33
Identities = 75/173 (43%), Positives = 102/173 (58%), Gaps = 1/173 (0%)
Frame = +1
Query: 28 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFE 207
V D GTG K GFAG+ P+ + PS VG + + D ++GDEA
Sbjct: 11 VCDNGTGMVKAGFAGDDAPRAVFPSI--------VGRPRHTGVMVGMGQKDAYVGDEAQS 62
Query: 208 ATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLA 384
G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN NRE +
Sbjct: 63 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMT 122
Query: 385 EIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
+IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DSGDGV+H VP+
Sbjct: 123 QIMFETFNAPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPI 167
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 139 bits (336), Expect = 1e-33
Identities = 75/173 (43%), Positives = 102/173 (58%), Gaps = 1/173 (0%)
Frame = +1
Query: 28 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFE 207
V D GTG K GFAG+ P+ + PS VG + + D ++GDEA
Sbjct: 11 VCDNGTGMVKAGFAGDDAPRAVFPSI--------VGRPRHTGVMVGMGQKDAYVGDEAQS 62
Query: 208 ATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLA 384
G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN NRE +
Sbjct: 63 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMT 122
Query: 385 EIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
+IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DSGDGV+H VP+
Sbjct: 123 QIMFETFNAPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPI 167
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 138 bits (335), Expect = 2e-33
Identities = 75/173 (43%), Positives = 102/173 (58%), Gaps = 1/173 (0%)
Frame = +1
Query: 28 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFE 207
V D GTG K GFAG+ P+ + PS VG + + D ++GDEA
Sbjct: 11 VCDNGTGMVKAGFAGDDAPRAVFPSI--------VGRPRHTGVMVGMGQKDAYVGDEAQS 62
Query: 208 ATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLA 384
G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN NRE +
Sbjct: 63 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
Query: 385 EIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
+IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DSGDGV+H VP+
Sbjct: 123 QIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPI 167
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 138 bits (335), Expect = 2e-33
Identities = 75/173 (43%), Positives = 102/173 (58%), Gaps = 1/173 (0%)
Frame = +1
Query: 28 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFE 207
V D GTG K GFAG+ P+ + PS VG + + D ++GDEA
Sbjct: 11 VCDNGTGMVKAGFAGDDAPRAVFPSI--------VGRPRHTGVMVGMGQKDAYVGDEAQS 62
Query: 208 ATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLA 384
G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN NRE +
Sbjct: 63 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
Query: 385 EIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
+IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DSGDGV+H VP+
Sbjct: 123 QIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPI 167
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 138 bits (335), Expect = 2e-33
Identities = 74/173 (42%), Positives = 102/173 (58%), Gaps = 1/173 (0%)
Frame = +1
Query: 28 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFE 207
V D GTG K GFAG+ P+ + PS VG + + D ++GDEA
Sbjct: 11 VCDNGTGMVKAGFAGDDAPRAVFPSV--------VGRPRHHGVMVGMNQKDAYVGDEAQS 62
Query: 208 ATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLA 384
G ++KYP+ HG+V +WD ME+ + LR PE+H L+TE PLN NRE +
Sbjct: 63 KRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMT 122
Query: 385 EIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
+IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DSGDGV+H VP+
Sbjct: 123 QIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPI 167
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 138 bits (335), Expect = 2e-33
Identities = 74/173 (42%), Positives = 102/173 (58%), Gaps = 1/173 (0%)
Frame = +1
Query: 28 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFE 207
V D GTG K GFAG+ P+ + PS VG + + D ++GDEA
Sbjct: 11 VCDNGTGMVKAGFAGDDAPRAVFPSV--------VGRPRHHGVMVGMNQKDAYVGDEAQS 62
Query: 208 ATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLA 384
G ++KYP+ HG+V +WD ME+ + LR PE+H L+TE PLN NRE +
Sbjct: 63 KRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMT 122
Query: 385 EIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
+IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DSGDGV+H VP+
Sbjct: 123 QIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPI 167
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 138 bits (335), Expect = 2e-33
Identities = 75/173 (43%), Positives = 102/173 (58%), Gaps = 1/173 (0%)
Frame = +1
Query: 28 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFE 207
V D GTG K GFAG+ P+ + PS VG + + D ++GDEA
Sbjct: 11 VCDNGTGMVKAGFAGDDAPRAVFPSI--------VGRPRHTGVMVGMGQKDAYVGDEAQS 62
Query: 208 ATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLA 384
G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN NRE +
Sbjct: 63 KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
Query: 385 EIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
+IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DSGDGV+H VP+
Sbjct: 123 QIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPI 167
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 138 bits (335), Expect = 2e-33
Identities = 74/173 (42%), Positives = 102/173 (58%), Gaps = 1/173 (0%)
Frame = +1
Query: 28 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFE 207
V D GTG K GFAG+ P+ + PS VG + + D ++GDEA
Sbjct: 11 VCDNGTGMVKAGFAGDDAPRAVFPSV--------VGRPRHHGVMVGMNQKDAYVGDEAQS 62
Query: 208 ATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLA 384
G ++KYP+ HG+V +WD ME+ + LR PE+H L+TE PLN NRE +
Sbjct: 63 KRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMT 122
Query: 385 EIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
+IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DSGDGV+H VP+
Sbjct: 123 QIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPI 167
>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
identical to actin-related protein 2 (ARP2) [Arabidopsis
thaliana] GI:3818624; contains Pfam profile PF00022:
Actin
Length = 389
Score = 121 bits (292), Expect = 3e-28
Identities = 66/173 (38%), Positives = 93/173 (53%), Gaps = 1/173 (0%)
Frame = +1
Query: 28 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFE 207
V D GTGY K GFAG P + P + + + + + K D +G+ E
Sbjct: 8 VCDNGTGYVKCGFAGENFPTSVFPCVVG-RPLLRYEESLMEQQVK-----DIVVGETCSE 61
Query: 208 ATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLA 384
+ YPV +GIV++WD ME + + L+ P D L+T+PPLN +NRE +
Sbjct: 62 LRHQLDINYPVHNGIVQNWDDMEHVWDHAFYNELKINPSDCKILLTDPPLNPSKNREKMI 121
Query: 385 EIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
E MFE +N G++I +QAVL L A+ TG+V+DSGDGVTH+VPV
Sbjct: 122 ETMFEKYNFAGVFIQIQAVLTL--------YAQGLLTGLVIDSGDGVTHVVPV 166
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 111 bits (266), Expect = 4e-25
Identities = 55/123 (44%), Positives = 80/123 (65%), Gaps = 1/123 (0%)
Frame = +1
Query: 178 DFFIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPL 354
D F+GD+A +G ++ YP+ HG+V +WD ME+ + LR PE+H L+TE PL
Sbjct: 8 DLFVGDDAEARSGILTLDYPMEHGVVSNWDDMEKIWYHTFYSELRVAPEEHPVLLTEAPL 67
Query: 355 NTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHI 534
N +RE + +IMFE+F VP +YI +QA L+L AS ++ TG V+DSGDGV++I
Sbjct: 68 NPKADREKMTQIMFETFAVPSMYIGMQAALSLHASGRT--------TGTVLDSGDGVSYI 119
Query: 535 VPV 543
VP+
Sbjct: 120 VPI 122
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 106 bits (255), Expect = 8e-24
Identities = 60/173 (34%), Positives = 95/173 (54%), Gaps = 1/173 (0%)
Frame = +1
Query: 28 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFE 207
V D G G + GFAG++ P+ + P + R + + ++G+E
Sbjct: 5 VCDKGHGMVQAGFAGDEAPKVVFPCVVG-------------RPRDGLNPNESYVGEEGHA 51
Query: 208 ATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLA 384
++K P+ HGIV +WD ME+ + LR +PE+H L+TE P N NRE +
Sbjct: 52 NRDILTLKDPMEHGIVNNWDDMEKIWHYTFYNELRVDPEEHPVLLTEAPYNPKANREKMT 111
Query: 385 EIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
+IMFESF+VP +Y+++Q+VL L +S ++ TG+V+D G+ V+H VPV
Sbjct: 112 QIMFESFDVPAMYVSMQSVLYLYSSGRT--------TGVVLDLGERVSHTVPV 156
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 96.3 bits (229), Expect = 1e-20
Identities = 61/189 (32%), Positives = 93/189 (49%), Gaps = 15/189 (7%)
Frame = +1
Query: 22 ACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKE----------TAKVGDQSTRRMTKAVE 171
A V+D+G+ K G+AG P+ + PS I + + K S T++ +
Sbjct: 9 AIVVDLGSHTCKAGYAGEDAPKAVFPSVIGAVDGVEAMDVDVDSTKTNSNSEDSKTESEK 68
Query: 172 DLD---FFIGDEA--FEATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFL 336
+ ++G +A + V P++ GIV DWDL++ E L +P +H L
Sbjct: 69 EKSKRKLYVGSQAMSYRRDHMEVLSPIKDGIVSDWDLVDNIWEHAFKSCLMIDPTEHPML 128
Query: 337 MTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSG 516
+ EPPLNT + RE AE+MFE + VP L++A VL A+ ++ T +VVD G
Sbjct: 129 LAEPPLNTQQQREKAAELMFEKYKVPALFMAKNPVLTSFATGRA--------TSLVVDCG 180
Query: 517 DGVTHIVPV 543
G T I PV
Sbjct: 181 GGSTTISPV 189
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 70.5 bits (165), Expect = 7e-13
Identities = 57/176 (32%), Positives = 80/176 (45%), Gaps = 2/176 (1%)
Frame = +1
Query: 22 ACVIDVGTGYTKLGFA-GNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDE 198
A V+D G+ + K G A ++ P IIPS + K G S T ED+
Sbjct: 3 ALVVDAGSKFLKAGAAIPDQSPAMIIPSQM--KRMVDDGSSSADNPTTVFEDVTLD---- 56
Query: 199 AFEATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPEN-RE 375
P+ G++ DWD ME + V+ L E + ++ PL TP+ RE
Sbjct: 57 -----------PIERGLIRDWDAMEDLLRYVVYTGLGWEEGNEGNILFTDPLCTPKAIRE 105
Query: 376 YLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
L ++MFE+FNV G Y + QAVL+L A + +G VD G G I PV
Sbjct: 106 QLVQLMFETFNVSGFYASEQAVLSLYAVGR--------ISGCTVDIGHGKIDIAPV 153
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 62.9 bits (146), Expect = 1e-10
Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 2/174 (1%)
Frame = +1
Query: 28 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFE 207
V+D G G K G G ++P +IP+ + ++K + T + DE +
Sbjct: 6 VLDNGGGLIKAGQGGERDPTTVIPNCLYKPLSSKKFIHPSPLTT---------LSDE-ID 55
Query: 208 ATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAE 387
T +V+ P+ G + + DL L P L+TE PL+ P + E
Sbjct: 56 LTSAAVRRPIDRGYLINSDLQREIWSHLFTSLLHIAPSSSSLLLTEAPLSIPSVQRTTDE 115
Query: 388 IMFESFNVPGLYIA-VQAVLAL-AASWKSRTSAERTFTGIVVDSGDGVTHIVPV 543
++FE F LYIA Q+++ L AS + + +T +VVD G TH VPV
Sbjct: 116 LVFEDFGFSSLYIAHPQSLVHLYEASRQPDSILSKTQCSLVVDCGFSFTHAVPV 169
>At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identical
to actin-related protein 5 (ARP5) GI:21489922 from
[Arabidopsis thaliana]
Length = 145
Score = 62.5 bits (145), Expect = 2e-10
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 9/127 (7%)
Frame = +1
Query: 22 ACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLD------- 180
A V+D+G+ K G+AG P+ + PS + + + T+ ++ D
Sbjct: 9 AIVVDLGSHTCKAGYAGEDAPKAVFPSVVGAIDGNGMDIDDAANTTEDAKESDKEKGKRK 68
Query: 181 FFIGDEA--FEATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPL 354
+ G +A F + P + GIV DWD+++ + L +P +H L+ EPPL
Sbjct: 69 LYTGSQALNFRRDQMEILSPTKDGIVTDWDMVDNVWDHAFRNCLMIDPTEHPMLLAEPPL 128
Query: 355 NTPENRE 375
N+ + RE
Sbjct: 129 NSQQQRE 135
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 61.3 bits (142), Expect = 4e-10
Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 3/174 (1%)
Frame = +1
Query: 28 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFE 207
VID G Y ++G+AG EP+ + + + G+ T V DLD + + F+
Sbjct: 23 VIDNGASYFRIGWAGETEPRVVFRNIVQRPRHKATGETVT-----IVGDLDPSMM-KYFD 76
Query: 208 ATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPE--DHHFLMTEPPLNTPENREYL 381
T + P +V +++ME YI F L A DH L+TE N ++R +
Sbjct: 77 CTRSGPRSPFDSNVVYQFEIME-YILDYAFDRLGANGSGIDHPILITECACNPVQSRSKM 135
Query: 382 AEIMFESFNVPGLYIAVQAVLALAASWK-SRTSAERTFTGIVVDSGDGVTHIVP 540
AE++FE++ VP + V A A S+K ++ GIV+ G TH +P
Sbjct: 136 AELLFETYGVPAVAFGVDA----AFSYKYNQLHGICKKDGIVLCPGFTTTHSIP 185
>At3g55120.1 68416.m06121 chalcone-flavanone isomerase / chalcone
isomerase (CHI) identical to SP|P41088
Length = 246
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 394 FESFNVPGLYIAVQAVLALAASWKSRTSAERT 489
F F V G+Y+ AV +L+ WK +T+ E T
Sbjct: 55 FVIFTVIGVYLEGNAVPSLSVKWKGKTTEELT 86
>At5g58610.1 68418.m07345 PHD finger transcription factor, putative
Length = 1065
Score = 27.5 bits (58), Expect = 6.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 283 RCTFPLNPSLLRYRGAQDTLQSIL 212
+C +PS LRY GA D+L IL
Sbjct: 763 QCELKYHPSCLRYDGACDSLDKIL 786
>At4g12870.1 68417.m02015 gamma interferon responsive lysosomal
thiol reductase family protein / GILT family protein
similar to SP|P13284 Gamma-interferon inducible
lysosomal thiol reductase precursor {Homo sapiens};
contains Pfam profile PF03227: Gamma interferon
inducible lysosomal thiol reductase (GILT)
Length = 229
Score = 27.5 bits (58), Expect = 6.1
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -2
Query: 249 DTVAHRILYRVSC-GFKSFITDEKIQIFDS 163
D V + Y C G +SFI DE +++FDS
Sbjct: 31 DKVELNLYYESLCPGCQSFIVDELVKVFDS 60
>At3g45800.1 68416.m04957 hypothetical protein
Length = 563
Score = 27.1 bits (57), Expect = 8.1
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 235 VRHGIVEDWDLMERYIEQCVFKYLRAE 315
+ H + E D ++ IE C++KY+ E
Sbjct: 114 ISHNVSETIDKVKNLIETCIYKYMSLE 140
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,287,612
Number of Sequences: 28952
Number of extensions: 253049
Number of successful extensions: 723
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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