Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0363
         (558 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    23   1.8  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   4.1  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   5.4  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    21   5.4  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   7.2  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   7.2  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   9.5  

>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +3

Query: 144 FFVKQYQXERSVDI*TKQREKIRHSFSSTNSFDMKLAHFCPL 269
           FFV + Q    +   + +  ++ HS S T S  + +   CP+
Sbjct: 128 FFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPM 169


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 321 CGTTRRVLKWSSGISFQTKDKSGPTSCQNYLYLKNYALF 205
           CGT+   L+W+  ++ + K K  P S    L L+   LF
Sbjct: 228 CGTSGNPLEWTGQVTVRKKRK--PYSKFQTLELEKEFLF 264


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +2

Query: 2   AGIRHEGQLFRLAAYRFTIRLYGLSPLPIGEFKNWH 109
           AG  HE      AAYR      G+SP    +  + H
Sbjct: 22  AGHHHEQSAAAAAAYRSFPLSLGMSPYASSQHHHHH 57


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 209 YFFTLFSLYINTSFXLVLFYKKINYLFNNIPKLNASF 99
           + F L+   ++T F      KK++ + +   KL ASF
Sbjct: 157 WLFILWVGILSTIFLCDTILKKVDDILSQAYKLEASF 193


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 17  EGQLFRLAAYRFTIRLY 67
           EG+  R+  Y FT+ LY
Sbjct: 114 EGEPPRICYYHFTLELY 130


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 17  EGQLFRLAAYRFTIRLY 67
           EG+  R+  Y FT+ LY
Sbjct: 114 EGEPPRICYYHFTLELY 130


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 348 QPLHQPPRACGT 313
           +P+H+P R C T
Sbjct: 96  EPVHRPGRCCKT 107


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,197
Number of Sequences: 336
Number of extensions: 1858
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13681771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)