Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0363
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    44   1e-05
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    26   4.3  
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    26   4.3  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    25   5.7  
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual        25   5.7  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   7.5  

>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 19/35 (54%), Positives = 25/35 (71%)
 Frame = +1

Query: 454 RVRALAQNTAYFRRRLRELGVVTFGHDDSPVVPML 558
           R+  LA N+ Y R  L+ LG + FG+DDSPVVP+L
Sbjct: 457 RIERLAFNSRYIRLGLKRLGFIIFGNDDSPVVPLL 491


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 282 ISFQTKDKSGPTSCQNYLYLKNYALFFH 199
           I F+T   + P S Q  L +K YA++ H
Sbjct: 22  ICFETNAATSPRSFQIQLRIKGYAVYHH 49


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 114 TECQFLNSPIGKGLSPYSLIVNL*AAK 34
           T   FL SP+GKGL P S  +N+ +A+
Sbjct: 229 TGIPFLPSPMGKGLLPESHPLNVSSAR 255


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 204 KIRHSFSSTNSFDMKLA 254
           K+ HSFS TN  D+K+A
Sbjct: 483 KLYHSFSVTNQLDVKVA 499


>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 463 ALAQNTAYFRRRLRELGVVTFGH 531
           ++    AY  ++LRE G V FGH
Sbjct: 162 SIVPRDAYVVKQLREAGAVLFGH 184


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
 Frame = -3

Query: 289  KWYFISNKGQKWANFMSKLFVLEKLCLIFSRCL------VYISTLLSXWYCFTKK*IT 134
            +W  +SNK  +  +F+ ++ +   LCL F + L      V  S  L  W C+    IT
Sbjct: 1472 EWIEVSNKLFERGHFLKRIAMNNYLCLYFWQVLDACPRNVLHSLSLEIWKCYKAYDIT 1529


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,761,925
Number of Sequences: 5004
Number of extensions: 29692
Number of successful extensions: 67
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)