Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0363
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0455 + 17903921-17904046,17904149-17904214,17905028-179051...    33   0.15 
01_07_0052 - 40767252-40767347,40767455-40767562,40767689-407678...    33   0.15 
01_07_0051 - 40759529-40759624,40759728-40759835,40759972-407601...    33   0.20 
01_07_0050 - 40751994-40752086,40752193-40752300,40752501-407526...    32   0.27 

>11_04_0455 +
           17903921-17904046,17904149-17904214,17905028-17905116,
           17905513-17905658,17905743-17905867,17905964-17906057,
           17906144-17906307,17906449-17906610,17906683-17906809,
           17906854-17906862,17906912-17907078,17907113-17907307,
           17907398-17907490
          Length = 520

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 11/35 (31%), Positives = 24/35 (68%)
 Frame = +1

Query: 454 RVRALAQNTAYFRRRLRELGVVTFGHDDSPVVPML 558
           ++  + +N+ +FR  L+++G    G +DSPV+P++
Sbjct: 373 KLARIRENSNFFRSELKKMGFEVLGDNDSPVMPIM 407


>01_07_0052 -
           40767252-40767347,40767455-40767562,40767689-40767855,
           40767930-40768056,40768138-40768299,40768467-40768630,
           40768722-40768815,40768892-40769016,40769110-40769255,
           40769361-40769449,40769564-40769608,40770165-40770230,
           40770332-40770457
          Length = 504

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
 Frame = +1

Query: 307 TCGP--AGPRRLVQWLRAHGHAHGYAHSMSCXXXXXXXXXXXXXXXXXXXXR-VRALAQ- 474
           +CG   A  + ++  L+    AH YA SMS                     R  + LAQ 
Sbjct: 330 SCGGYIAASKEIIDHLKHICPAHIYATSMSPPAVQQVISAIKVILGEDGSNRGAKKLAQI 389

Query: 475 --NTAYFRRRLRELGVVTFGHDDSPVVPML 558
             N+ +FR  L+++G    G +DSPV+P++
Sbjct: 390 RENSNFFRSELQKMGFEVLGDNDSPVMPIM 419


>01_07_0051 -
           40759529-40759624,40759728-40759835,40759972-40760138,
           40760670-40760796,40760885-40761046,40761235-40761398,
           40761561-40761654,40761736-40761860,40762304-40762449,
           40762796-40762884,40763453-40763518,40763824-40763973
          Length = 497

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
 Frame = +1

Query: 307 TCGP--AGPRRLVQWLRAHGHAHGYAHSMSCXXXXXXXXXXXXXXXXXXXXR-VRALAQ- 474
           +CG   A  + ++  L+    AH YA SMS                     R  + LAQ 
Sbjct: 323 SCGGYIAASKEIIDHLKHICPAHIYATSMSPPAVQQVISAIEVILGEDGSDRGAKKLAQI 382

Query: 475 --NTAYFRRRLRELGVVTFGHDDSPVVPML 558
             N+ +FR  L ++G    G +DSPV+P++
Sbjct: 383 RENSNFFRSELEKMGFEVLGDNDSPVMPIM 412


>01_07_0050 -
           40751994-40752086,40752193-40752300,40752501-40752667,
           40752756-40752882,40752984-40753145,40753674-40753837,
           40753931-40754024,40754160-40754284,40754387-40754532,
           40754676-40754764,40755524-40755589,40755990-40756148
          Length = 499

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 454 RVRALAQNTAYFRRRLRELGVVTFGHDDSPVVPML 558
           ++  +  N+ +FR  L+++G    G +DSPV+P +
Sbjct: 381 KIAQIRDNSNFFRSELQKMGFEVLGDNDSPVMPFM 415


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,517,292
Number of Sequences: 37544
Number of extensions: 181563
Number of successful extensions: 546
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)