Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0363
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50307-2|AAA92303.1|  558|Caenorhabditis elegans Serine palmitoy...    46   2e-05
U50307-1|AAK71365.1|  586|Caenorhabditis elegans Serine palmitoy...    46   2e-05
Z81127-5|CAB03390.2|  512|Caenorhabditis elegans Hypothetical pr...    41   5e-04
AF025468-6|AAB71043.2|  283|Caenorhabditis elegans Hypothetical ...    29   2.3  
AF022983-1|AAB69946.2|  324|Caenorhabditis elegans Serpentine re...    28   4.0  
Z99942-7|CAB17070.2|  462|Caenorhabditis elegans Hypothetical pr...    22   4.4  
AF039046-2|AAB94218.2|  516|Caenorhabditis elegans Hypothetical ...    27   9.1  

>U50307-2|AAA92303.1|  558|Caenorhabditis elegans Serine palmitoyl
           transferase familyprotein 2, isoform a protein.
          Length = 558

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 18/35 (51%), Positives = 27/35 (77%)
 Frame = +1

Query: 454 RVRALAQNTAYFRRRLRELGVVTFGHDDSPVVPML 558
           R+  LA+N+ YFR +L++ G + +G +DSPVVPML
Sbjct: 443 RIERLARNSHYFRMKLKQNGFIVYGSNDSPVVPML 477


>U50307-1|AAK71365.1|  586|Caenorhabditis elegans Serine palmitoyl
           transferase familyprotein 2, isoform b protein.
          Length = 586

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 18/35 (51%), Positives = 27/35 (77%)
 Frame = +1

Query: 454 RVRALAQNTAYFRRRLRELGVVTFGHDDSPVVPML 558
           R+  LA+N+ YFR +L++ G + +G +DSPVVPML
Sbjct: 471 RIERLARNSHYFRMKLKQNGFIVYGSNDSPVVPML 505


>Z81127-5|CAB03390.2|  512|Caenorhabditis elegans Hypothetical
           protein T22G5.5 protein.
          Length = 512

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 15/31 (48%), Positives = 25/31 (80%)
 Frame = +1

Query: 466 LAQNTAYFRRRLRELGVVTFGHDDSPVVPML 558
           L +N+ YFR+ LR+ G + +G++DSPVVP++
Sbjct: 408 LLENSRYFRKELRKRGFLVYGNNDSPVVPLM 438


>AF025468-6|AAB71043.2|  283|Caenorhabditis elegans Hypothetical
           protein T27A1.2 protein.
          Length = 283

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -2

Query: 185 YINTSFXLVLFYKKINYLFNNIPKLN 108
           + N SF LV F KK+  LF NIP+L+
Sbjct: 122 FSNCSFQLVGFNKKLIKLFYNIPRLD 147


>AF022983-1|AAB69946.2|  324|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 16 protein.
          Length = 324

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = -2

Query: 341 CTSRRGPAGPHVECSNGQVVFHFKQRTKVGQLHVKTICT*KTMPYFFTLFSLYINTSFXL 162
           C + R P    + C++   VF   +RT   + + K     KT+ Y F    +++ T+  +
Sbjct: 97  CLATRIPYIFGLFCASYSTVFMVLERTIATKNYKKYENRHKTLGYCFIFGQIFMGTTTTI 156

Query: 161 VLFYK 147
            +FYK
Sbjct: 157 AIFYK 161


>Z99942-7|CAB17070.2|  462|Caenorhabditis elegans Hypothetical
           protein H13N06.5 protein.
          Length = 462

 Score = 22.2 bits (45), Expect(3) = 4.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 352 AHGHAHGYAH 381
           AH H HG+AH
Sbjct: 81  AHDHDHGHAH 90



 Score = 21.8 bits (44), Expect(3) = 4.4
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 355 HGHAHGYAHS 384
           HGHAH + H+
Sbjct: 86  HGHAHDHGHA 95



 Score = 20.6 bits (41), Expect(3) = 4.4
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +1

Query: 349 RAHGHAHG 372
           + HGHAHG
Sbjct: 41  QGHGHAHG 48


>AF039046-2|AAB94218.2|  516|Caenorhabditis elegans Hypothetical
           protein R09B5.11 protein.
          Length = 516

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 307 SSAQMVKWYFISNKGQKWANFMSKLFVL 224
           SS  +V    +SN G  WA++M+ LF+L
Sbjct: 386 SSILIVITLTLSNAGYHWASYMNVLFIL 413


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,886,725
Number of Sequences: 27780
Number of extensions: 170921
Number of successful extensions: 401
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)