Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0363
         (558 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48790.1 68416.m05328 serine C-palmitoyltransferase, putative...    40   0.001
At3g48780.1 68416.m05327 serine C-palmitoyltransferase, putative...    38   0.003
At5g23670.1 68418.m02775 serine C-palmitoyltransferase (LCB2) id...    37   0.008
At5g19390.2 68418.m02311 pleckstrin homology (PH) domain-contain...    28   4.9  
At5g19390.1 68418.m02310 pleckstrin homology (PH) domain-contain...    28   4.9  
At5g12150.1 68418.m01426 pleckstrin homology (PH) domain-contain...    28   4.9  
At2g38950.1 68415.m04786 transcription factor jumonji (jmj) fami...    27   6.4  
At4g19670.1 68417.m02889 zinc finger (C3HC4-type RING finger) fa...    27   8.5  
At1g28430.1 68414.m03495 cytochrome P450, putative similar to cy...    27   8.5  

>At3g48790.1 68416.m05328 serine C-palmitoyltransferase, putative
           similar to serine palmitoyltransferase from Solanum
           tuberosum [GI:4995890], Homo sapiens [SP|O15270], Mus
           musculus [SP|P97363]
          Length = 350

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
 Frame = +1

Query: 307 TCGP--AGPRRLVQWLRAHGHAHGYAHSMSCXXXXXXXXXXXXXXXXXXXXR----VRAL 468
           +CG   AG + LVQ+L+ H  AH YA S+S                     R    +  +
Sbjct: 172 SCGGYIAGSKDLVQYLKQHYPAHLYATSISTPAAQQVISAIKVIFGVDGSNRGELKLARI 231

Query: 469 AQNTAYFRRRLRELGVVTFGHDDSPVVPML 558
            +N+ +FR  L+++G    G  DSP++P++
Sbjct: 232 RENSNFFRAELQKMGFKVLGVYDSPIMPIM 261


>At3g48780.1 68416.m05327 serine C-palmitoyltransferase, putative
           similar to serine palmitoyltransferase from Solanum
           tuberosum [GI:4995890], Homo sapiens [SP|O15270], Mus
           musculus [SP|P97363]
          Length = 489

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
 Frame = +1

Query: 307 TCGP--AGPRRLVQWLRAHGHAHGYAHSMSCXXXXXXXXXXXXXXXXXXXXR----VRAL 468
           +CG   AG + L+Q+L+    AH YA S+S                     R    +  +
Sbjct: 315 SCGGYIAGSKDLIQYLKHQCPAHLYATSISTPSATQIISAIKVILGEDGSNRGAQKLARI 374

Query: 469 AQNTAYFRRRLRELGVVTFGHDDSPVVPML 558
            +N+ +FR  L+++G    G +DSPV+P++
Sbjct: 375 RENSNFFRAELQKMGFEVLGDNDSPVMPIM 404


>At5g23670.1 68418.m02775 serine C-palmitoyltransferase (LCB2)
           identical to serine palmitoyltransferase [Arabidopsis
           thaliana] GI:9309380; similar to serine
           palmitoyltransferase from Solanum tuberosum
           [GI:4995890], Homo sapiens [SP|O15270], Mus musculus
           [SP|P97363]; contains Pfam profile PF00155:
           aminotransferase, classes I and II
          Length = 489

 Score = 37.1 bits (82), Expect = 0.008
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
 Frame = +1

Query: 307 TCGP--AGPRRLVQWLRAHGHAHGYAHSMSCXXXXXXXXXXXXXXXXXXXXR----VRAL 468
           +CG   AG + L+Q+L+    AH YA S+                      R    +  +
Sbjct: 315 SCGGYIAGSKELIQYLKHQCPAHLYATSIPTPSAQQIISAIKVILGEDGSNRGAQKLARI 374

Query: 469 AQNTAYFRRRLRELGVVTFGHDDSPVVPML 558
            +N+ +FR  L+++G    G +DSPV+P++
Sbjct: 375 RENSNFFRAELQKMGFEVLGDNDSPVMPIM 404


>At5g19390.2 68418.m02311 pleckstrin homology (PH) domain-containing
           protein / RhoGAP domain-containing protein weak
           similarity to rho-GTPase activating protein [Homo
           sapiens] GI:14245732; contains Pfam profiles PF00169: PH
           domain, PF00620: RhoGAP domain
          Length = 870

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 280 FISNKGQKWANFMSKLFVLEKLCLIF 203
           FIS+KG  W ++  + F+L +  L+F
Sbjct: 26  FISSKGLGWTSWKKRWFILTRTSLVF 51


>At5g19390.1 68418.m02310 pleckstrin homology (PH) domain-containing
           protein / RhoGAP domain-containing protein weak
           similarity to rho-GTPase activating protein [Homo
           sapiens] GI:14245732; contains Pfam profiles PF00169: PH
           domain, PF00620: RhoGAP domain
          Length = 822

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 280 FISNKGQKWANFMSKLFVLEKLCLIF 203
           FIS+KG  W ++  + F+L +  L+F
Sbjct: 26  FISSKGLGWTSWKKRWFILTRTSLVF 51


>At5g12150.1 68418.m01426 pleckstrin homology (PH) domain-containing
           protein / RhoGAP domain-containing protein weak
           similarity to glucocorticoid receptor DNA binding factor
           1 [Canis familiaris] GI:23266717; contains Pfam profiles
           PF00169: PH domain, PF00620: RhoGAP domain
          Length = 827

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 280 FISNKGQKWANFMSKLFVLEKLCLIF 203
           FIS+KG  W ++  + F+L +  L+F
Sbjct: 26  FISSKGLGWTSWKKRWFILTRTSLVF 51


>At2g38950.1 68415.m04786 transcription factor jumonji (jmj) family
           protein / zinc finger (C5HC2 type) family protein
           contains Pfam domains, PF02375: jmjN domain, PF02373:
           jmjC domain and PF02928: C5HC2 zinc finger
          Length = 708

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 59  RLYGLSPLPIGEFKNWHSVLGCY 127
           RLY L  L +G  + W+SV GC+
Sbjct: 339 RLYSLCYLHVGAPRVWYSVAGCH 361


>At4g19670.1 68417.m02889 zinc finger (C3HC4-type RING finger)
           family protein contains a Prosite:PS00518 Zinc finger,
           C3HC4 type (RING finger), signature and Pfam domain
           PF01485: IBR domain
          Length = 532

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 198 REKIRHSFSSTNSFDMKLAHFCPLFE 275
           RE++    S+ N F +KLA FC L E
Sbjct: 157 RERVLEKTSNLNGFVLKLAPFCDLDE 182


>At1g28430.1 68414.m03495 cytochrome P450, putative similar to
           cytochrome P450 (CYP93A1) GI:1435059 from [Glycine max]
          Length = 521

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = -2

Query: 209 YFFTLFSLYINTSFXLVLFYKKINYLFNNIP 117
           + FTL  L I+T F  VLFYKK N  F+  P
Sbjct: 13  FIFTLIFL-ISTLFLFVLFYKKPNDGFDVPP 42


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,247,486
Number of Sequences: 28952
Number of extensions: 152141
Number of successful extensions: 376
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)