Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0358
         (704 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00003BFB0D Cluster: PREDICTED: hypothetical protein;...    52   1e-05
UniRef50_Q01AB2 Cluster: Chromosome 04 contig 1, DNA sequence; n...    37   0.55 
UniRef50_Q89UH4 Cluster: Blr1443 protein; n=3; Bradyrhizobium|Re...    36   1.3  
UniRef50_Q9E965 Cluster: P1; n=1; Ryegrass mottle virus|Rep: P1 ...    34   3.9  
UniRef50_UPI0000DB7D01 Cluster: PREDICTED: similar to Wiskott-Al...    33   5.2  
UniRef50_Q0RT80 Cluster: Putative uncharacterized protein; n=2; ...    33   6.8  
UniRef50_A1VB90 Cluster: Aminotransferase, class I and II; n=2; ...    33   6.8  
UniRef50_Q82RA1 Cluster: Putative uncharacterized protein; n=1; ...    33   9.0  
UniRef50_Q6A8F8 Cluster: Prephenate dehydrogenase; n=1; Propioni...    33   9.0  
UniRef50_Q4QCT7 Cluster: Putative uncharacterized protein; n=2; ...    33   9.0  

>UniRef50_UPI00003BFB0D Cluster: PREDICTED: hypothetical protein;
           n=1; Apis mellifera|Rep: PREDICTED: hypothetical protein
           - Apis mellifera
          Length = 133

 Score = 52.0 bits (119), Expect = 1e-05
 Identities = 37/86 (43%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
 Frame = +1

Query: 262 MAFMMPVVKNDWDIYNSQXXXXXXXXXXKAGFNVGGRVRKISE-SRSEGPALSPRSAGLS 438
           MAFMMPV+KN+WDIY +                   R RK+SE S+SEGP+LS  S G S
Sbjct: 1   MAFMMPVMKNEWDIYKTNRSRRSSECSNPQAC----RSRKVSECSKSEGPSLS-TSPG-S 54

Query: 439 PHRSAPAMRSLSYCRAPHSRVSLRAA 516
              ++PA RS+       SR S RA+
Sbjct: 55  DFLTSPAHRSVPLTSRHFSRTSSRAS 80


>UniRef50_Q01AB2 Cluster: Chromosome 04 contig 1, DNA sequence; n=1;
           Ostreococcus tauri|Rep: Chromosome 04 contig 1, DNA
           sequence - Ostreococcus tauri
          Length = 469

 Score = 36.7 bits (81), Expect = 0.55
 Identities = 24/74 (32%), Positives = 36/74 (48%)
 Frame = -2

Query: 685 ITDSVAALARRFTVTGRARTLRTASVAPVTLRAPCCGTSPRALLPADYPNPCWGCLAPHA 506
           +T +VAA+A  FT++  A  L   S AP       CG+  RALL +      +  L P  
Sbjct: 175 VTTTVAAIAVSFTISNSATPLDPTSTAPKRTTGATCGSLSRALLRSPRARLTFVALTPPV 234

Query: 505 ARLASEARDSTTTS 464
           + L++ A   T+ S
Sbjct: 235 S-LSTNASTHTSLS 247


>UniRef50_Q89UH4 Cluster: Blr1443 protein; n=3; Bradyrhizobium|Rep:
           Blr1443 protein - Bradyrhizobium japonicum
          Length = 275

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = -3

Query: 321 GPLRVVYVPIVLHYWHHERHLGEGGGDSFVGTF 223
           GP + V    V H WHH   L EGG  +F GTF
Sbjct: 202 GPFKYVLATPVFHRWHH-TSLEEGGDTNFAGTF 233


>UniRef50_Q9E965 Cluster: P1; n=1; Ryegrass mottle virus|Rep: P1 -
           Ryegrass mottle virus
          Length = 133

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 25/72 (34%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
 Frame = -2

Query: 601 VTLRAPCCGTSPRALLPADYPNPCWGCLAPHAARLASEARD-STTTSASPERCGED*ALP 425
           VTL  P CG S +A  P    +  WG   PH  RL  +AR    T    P    E     
Sbjct: 51  VTLVCPHCGVSEQATFPTRGLSSNWGHHGPHDLRLDCKARHWHGTCEVIPSSEQESRVAS 110

Query: 424 IVVTTPGLRTVT 389
             V  PGL  +T
Sbjct: 111 DGVFEPGLTHIT 122


>UniRef50_UPI0000DB7D01 Cluster: PREDICTED: similar to
           Wiskott-Aldrich syndrome (eczema-thrombocytopenia); n=1;
           Apis mellifera|Rep: PREDICTED: similar to
           Wiskott-Aldrich syndrome (eczema-thrombocytopenia) -
           Apis mellifera
          Length = 528

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 23/77 (29%), Positives = 29/77 (37%)
 Frame = -2

Query: 568 PRALLPADYPNPCWGCLAPHAARLASEARDSTTTSASPERCGED*ALPIVVTTPGLRTVT 389
           P AL   +YP P      PH  R+A     +   + S        A P+  T P      
Sbjct: 308 PTALQRQEYPPPVPARTVPHQTRIAPPLPPNRFNAPSTPPSAPSSAPPVHRTLPTRPPPP 367

Query: 388 PIFSAPCLPR*TPPSRP 338
            + SAP LP   PP  P
Sbjct: 368 SLTSAPSLPPPPPPPPP 384


>UniRef50_Q0RT80 Cluster: Putative uncharacterized protein; n=2;
           Bacteria|Rep: Putative uncharacterized protein - Frankia
           alni (strain ACN14a)
          Length = 1098

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -2

Query: 625 LRTASVAPVTLRAPCCGTSPRAL-LPADYPNPCWGCLAPHAARLASEARDST 473
           LRTA++A    RA       RAL  PA  P      LAPHAAR+   A D +
Sbjct: 593 LRTAALASCARRAGLFAADARALPAPAPAPPERAPTLAPHAARIVEGALDGS 644


>UniRef50_A1VB90 Cluster: Aminotransferase, class I and II; n=2;
           Desulfovibrio vulgaris subsp. vulgaris|Rep:
           Aminotransferase, class I and II - Desulfovibrio
           vulgaris subsp. vulgaris (strain DP4)
          Length = 424

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 26/70 (37%), Positives = 32/70 (45%)
 Frame = -2

Query: 673 VAALARRFTVTGRARTLRTASVAPVTLRAPCCGTSPRALLPADYPNPCWGCLAPHAARLA 494
           +A L RR T      T  TAS AP+T  AP   +SP A  P   P P  G  +P     +
Sbjct: 157 LARLDRRLTAWRHETTAETASAAPLTEGAPL--SSPPATCPTASPPP-HGDASPVILTES 213

Query: 493 SEARDSTTTS 464
             + D T TS
Sbjct: 214 LFSMDGTVTS 223


>UniRef50_Q82RA1 Cluster: Putative uncharacterized protein; n=1;
           Streptomyces avermitilis|Rep: Putative uncharacterized
           protein - Streptomyces avermitilis
          Length = 146

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 19/36 (52%), Positives = 23/36 (63%)
 Frame = +3

Query: 579 QQGARRVTGATLAVRSVRALPVTVNRRASAATLSVI 686
           +  AR V  A+LA R+VRA P  VNRRA    +SVI
Sbjct: 11  RSAARAVAAASLAWRTVRA-PAGVNRRAPTPPISVI 45


>UniRef50_Q6A8F8 Cluster: Prephenate dehydrogenase; n=1;
           Propionibacterium acnes|Rep: Prephenate dehydrogenase -
           Propionibacterium acnes
          Length = 423

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -2

Query: 682 TDSVAALARRFTVTGRARTLRTASVAPVTLRAPCCGTSPRALLPADY--PNPCW 527
           T S   + RR+  +   R + + +++P TLR  C   +PR ++ +D   P PCW
Sbjct: 3   TPSTCPITRRYPRSCELRHM-SLTLSPRTLRWVCLTATPRRVVTSDVSTPRPCW 55


>UniRef50_Q4QCT7 Cluster: Putative uncharacterized protein; n=2;
           Leishmania|Rep: Putative uncharacterized protein -
           Leishmania major
          Length = 1961

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -2

Query: 700 HYREHITDSVAALARRF--TVTGRARTLRTASVA-PVTLRAPCCGTSPRALLP 551
           HY EH+TD+ AA        + G A TL    VA P  LRA   GT  R+  P
Sbjct: 3   HYSEHLTDATAAEENGACGEMNGSAGTLCLDHVANPTALRASVYGTGQRSTAP 55


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 638,579,072
Number of Sequences: 1657284
Number of extensions: 12165107
Number of successful extensions: 38685
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 37010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38655
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)