Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0358
(704 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0232 + 22174516-22174768,22175278-22175471,22175557-221756... 29 3.6
09_04_0038 - 13996505-13996836,13997047-13997077,13997307-139974... 29 4.8
04_04_0095 - 22775340-22776017 29 4.8
02_03_0243 - 16791789-16793306 29 4.8
01_06_1165 + 35056058-35056347,35056562-35057114 29 4.8
05_01_0148 - 985745-986180,986290-986385,986498-986694,986824-98... 28 6.3
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508... 28 6.3
06_01_1179 + 10137652-10138038 28 8.3
01_01_1190 + 9463973-9465732,9466210-9466440,9467664-9467793,946... 28 8.3
>03_05_0232 +
22174516-22174768,22175278-22175471,22175557-22175604,
22176707-22176784,22178073-22178145,22178406-22178577,
22179652-22180083,22180209-22180400,22180696-22180771
Length = 505
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -2
Query: 550 ADYPNPCWGCLAPHAARLASEARDSTTTSASPE 452
+DYP WG AP+ A A+E ST T AS +
Sbjct: 151 SDYPRLFWGAFAPNTASGATE--QSTITCASSQ 181
>09_04_0038 -
13996505-13996836,13997047-13997077,13997307-13997420,
13997546-13997686,13997787-13997851,13997943-13998039,
13998096-13998257,13998360-13998473,14001263-14001311,
14001967-14002047,14003504-14003561,14003671-14004031,
14004129-14004213,14004320-14004591,14004712-14004914,
14005419-14005494
Length = 746
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 602 GDSARALLWNFSSRAXXXXXXXXXXXXXGAARSETRE 492
G +A A+ W+F+SRA AAR ETRE
Sbjct: 33 GAAAAAMDWSFASRAALMSFRSSSSAAAAAAREETRE 69
>04_04_0095 - 22775340-22776017
Length = 225
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 415 SPRSAGLSPHRSAPAMRSLSYCRAPHSRVSLR 510
+P S+G + R +PA R LS C+AP V +R
Sbjct: 141 APASSGSTWLRLSPACRELSGCKAPKLLVEVR 172
>02_03_0243 - 16791789-16793306
Length = 505
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -2
Query: 640 GRARTLRTASVAPVTLRAPCCGTSPRALLPADYPNPCW 527
G R LRTA VAP + C P A P + + W
Sbjct: 8 GSFRVLRTAHVAPSSSAGAGCNPLPEATQPLTFLDAIW 45
>01_06_1165 + 35056058-35056347,35056562-35057114
Length = 280
Score = 28.7 bits (61), Expect = 4.8
Identities = 21/70 (30%), Positives = 27/70 (38%)
Frame = -1
Query: 674 CGGAGATVHRHR*GTHAPHRECRSGDSARALLWNFSSRAXXXXXXXXXXXXXGAARSETR 495
CGG A R G P SG S+ A WN +SR G A SET
Sbjct: 174 CGGDAAAAAACRDGELMPPAVINSGASSFAAAWNMASREPASSLAVERRSCDGDAPSETS 233
Query: 494 E*GARQYDNE 465
+ + + +E
Sbjct: 234 QGWSPSFSSE 243
>05_01_0148 -
985745-986180,986290-986385,986498-986694,986824-986919,
987020-987059,987751-987857
Length = 323
Score = 28.3 bits (60), Expect = 6.3
Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Frame = +1
Query: 367 GRVRKISESRSEGPALS---PRSAGLSPH--RSAPAMRSLSYCRAPHSRVS 504
GR R S SRS + S RS SP R RSLSY R+P +S
Sbjct: 163 GRSRSYSRSRSRSRSYSRSRSRSLSGSPRARRELERSRSLSYSRSPRRSIS 213
>03_05_0176 +
21546952-21547887,21548856-21548921,21549959-21550877,
21551277-21551449,21551927-21552475
Length = 880
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -3
Query: 240 SFVGTFLEKLPPLRRNKICSRKLTLRSIMILIFFFTECLY-FRKIS 106
S GTF P + +K C+RK+ + S ++++ T CL F+ +S
Sbjct: 204 SKAGTFRWMAPEMIHDKRCNRKVDVYSFGLVLWELTTCLVPFQNLS 249
>06_01_1179 + 10137652-10138038
Length = 128
Score = 27.9 bits (59), Expect = 8.3
Identities = 29/102 (28%), Positives = 38/102 (37%)
Frame = -2
Query: 676 SVAALARRFTVTGRARTLRTASVAPVTLRAPCCGTSPRALLPADYPNPCWGCLAPHAARL 497
S A +A F + A + A+ AP +P S A PA P A R
Sbjct: 2 SRATVAILFYILTAAAAISAAAQAPAESPSPKPSKSTAAATPAKAPT------VASAPRK 55
Query: 496 ASEARDSTTTSASPERCGED*ALPIVVTTPGLRTVTPIFSAP 371
A A TTT A+ G D + TP V+P+ P
Sbjct: 56 AGPAAAPTTTVATSAPAGGDEV--SIPPTPFATVVSPVADGP 95
>01_01_1190 +
9463973-9465732,9466210-9466440,9467664-9467793,
9468723-9468888,9469528-9469859,9470284-9470513,
9471535-9471613,9471689-9471865
Length = 1034
Score = 27.9 bits (59), Expect = 8.3
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = -2
Query: 619 TASVAPVTLRAPCCGTSPRALLPADYPNPCWGCLAPHAARLASEARDSTTTSASPERCGE 440
+AS T+ A +PRA P P P P AA AS + S+++S+S R G
Sbjct: 9 SASAPFPTIPAASSPRNPRAARPRRQPAPFRSSDHPGAAS-ASASASSSSSSSSTRRLGV 67
Query: 439 D 437
D
Sbjct: 68 D 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,975,831
Number of Sequences: 37544
Number of extensions: 358101
Number of successful extensions: 1280
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1279
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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