Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0358
         (704 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10640| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_49676| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_10640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1039

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -2

Query: 619 TASVAPVTLRAPCCGTSPRALLPADY--PNPCWGCLAPHAA 503
           TA    V + A  CGT   AL+   Y      WGCLAP AA
Sbjct: 704 TAYYPKVCVSAFVCGTGIAALVAPLYYAAATTWGCLAPRAA 744


>SB_49676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -2

Query: 604 PVTLRAPCCGTSPRALLPADYPNPCWGCLAPHAARLASEARDSTTTSASPER 449
           P  L  P     P  L     P+ C GC+    ++  +E R ST + + PE+
Sbjct: 18  PQCLTLPSHPIEPDNLPMQHDPSRCLGCIYSKRSKSMNERRKSTDSVSDPEK 69


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,094,207
Number of Sequences: 59808
Number of extensions: 389415
Number of successful extensions: 1255
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1252
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)