Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0358
         (704 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ974169-1|ABJ52809.1|  508|Anopheles gambiae serpin 11 protein.       31   0.027
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    27   0.43 
AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein hom...    25   1.8  
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            24   4.1  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    24   4.1  
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    24   5.4  
AB090823-1|BAC57921.1|  429|Anopheles gambiae gag-like protein p...    24   5.4  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    23   7.1  
AB097148-1|BAC82627.1|  357|Anopheles gambiae gag-like protein p...    23   9.4  

>DQ974169-1|ABJ52809.1|  508|Anopheles gambiae serpin 11 protein.
          Length = 508

 Score = 31.5 bits (68), Expect = 0.027
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = -2

Query: 610 VAPVTLRAPCCGTSPRALLPADYPNPCWGCLAPHAARLASEARDSTTTSASPERCGE 440
           VA + + +  C T   AL P++ P PC G    +  RL S A  +T+TS   +  G+
Sbjct: 59  VASLPIYSDRCATIRSALEPSEQPAPCNGNRCTYDTRL-SGASSATSTSMDKQPVGD 114


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 0.43
 Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +1

Query: 358 NVGGRVRKISESRSEGPALSPRSAGLSPH-RSAPAMR 465
           N    +RKI  SR      SPRS G  P  RS PA R
Sbjct: 242 NAHASIRKIPPSRRNPRRRSPRSGGRWPSCRSPPARR 278


>AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein
           homolog protein.
          Length = 394

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 324 TGPLRVVYVPIVLHYWHHERHLGEGGGD 241
           +G L +   P + H+ HH  H   GGG+
Sbjct: 110 SGALHLGQNPNLHHHHHHHHHGNNGGGN 137


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 288 LHYWHHERHLGEGGGDS 238
           LH+ HH  H    GG+S
Sbjct: 159 LHHHHHHHHNAPAGGES 175


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 341 PRRRGSTWEAGCGKYRSHGPKARR 412
           PRRR   W     + RSH  +ARR
Sbjct: 267 PRRRAYWWTTEIAQCRSHCIEARR 290



 Score = 23.0 bits (47), Expect = 9.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 296 GTYTTLKGPVEPQNRPRRRGST 361
           G Y TL G +  Q+ PR R  T
Sbjct: 340 GAYRTLMGKMVGQDLPRERNPT 361


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskeletal
            structural protein protein.
          Length = 1645

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 288  LHYWHHERHLGEG 250
            LH+ HH  H GEG
Sbjct: 1318 LHHGHHHHHGGEG 1330


>AB090823-1|BAC57921.1|  429|Anopheles gambiae gag-like protein
           protein.
          Length = 429

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 596 SHRSDTRGAERACPTCDGEPSRQRRHTI 679
           SHR    G ++ C   + +  RQ++HT+
Sbjct: 166 SHRQVVIGTQQECLQPEQQHQRQQQHTV 193


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -2

Query: 541 PNPCWGCLAPHAARLASEARDSTTTSASPERCGE-D*ALPIVVTT 410
           P+P     +PH A LA  +  S +T  SP        + PIV T+
Sbjct: 717 PSPHHHLTSPHGAPLALTSSKSASTHPSPHPATRASPSSPIVATS 761


>AB097148-1|BAC82627.1|  357|Anopheles gambiae gag-like protein
           protein.
          Length = 357

 Score = 23.0 bits (47), Expect = 9.4
 Identities = 17/72 (23%), Positives = 25/72 (34%)
 Frame = -2

Query: 670 AALARRFTVTGRARTLRTASVAPVTLRAPCCGTSPRALLPADYPNPCWGCLAPHAARLAS 491
           AA A        A T   A+ +PV   A   G       P D  +P     AP  A +  
Sbjct: 219 AANAASTAAAPAAATAHAATASPVATAALAAGAPATVSTPMDKDDPA-AAAAPATAEVPG 277

Query: 490 EARDSTTTSASP 455
               +   +++P
Sbjct: 278 AVVANPAATSAP 289


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 668,731
Number of Sequences: 2352
Number of extensions: 13267
Number of successful extensions: 47
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71922660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)