Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0358
         (704 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC108915-1|AAI08916.1|  258|Homo sapiens VENT homeobox homolog (...    31   5.3  
BC005186-1|AAH05186.1|  142|Homo sapiens mitochondrial ribosomal...    31   5.3  
AF151892-1|AAD34129.1|  142|Homo sapiens CGI-134 protein protein.      31   5.3  
U12170-1|AAA20602.1| 1124|Homo sapiens zinc finger homeodomain p...    30   9.3  
BC037582-1|AAH37582.1|  349|Homo sapiens ATXN7L2 protein protein.      30   9.3  
AL355145-2|CAI22938.1|  349|Homo sapiens ataxin 7-like 2 protein.      30   9.3  
AL355145-1|CAI22937.1|  722|Homo sapiens ataxin 7-like 2 protein.      30   9.3  

>BC108915-1|AAI08916.1|  258|Homo sapiens VENT homeobox homolog
           (Xenopus laevis) protein.
          Length = 258

 Score = 30.7 bits (66), Expect = 5.3
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = +1

Query: 367 GRVRKISESRSEGPALSPRSAGLSPHRSAPAMRSLSYCRAPHSRVSLRAA 516
           G V  +S+S   GP  +PR A  SP  S P     S  R P   VS++ A
Sbjct: 18  GSVDWLSQSSCSGPTHTPRPADFSP-GSLPGPGQTSGAREPPQAVSIKEA 66


>BC005186-1|AAH05186.1|  142|Homo sapiens mitochondrial ribosomal
           protein S18C protein.
          Length = 142

 Score = 30.7 bits (66), Expect = 5.3
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -3

Query: 207 PLRRNKICSRKLTLRSIMILIFF---FTECLYFRKISGFC 97
           PL++  +C + +  +++ +L  F   FT C+Y R I+G C
Sbjct: 61  PLKKCILCGKHVDYKNVQLLSQFVSPFTGCIYGRHITGLC 100


>AF151892-1|AAD34129.1|  142|Homo sapiens CGI-134 protein protein.
          Length = 142

 Score = 30.7 bits (66), Expect = 5.3
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -3

Query: 207 PLRRNKICSRKLTLRSIMILIFF---FTECLYFRKISGFC 97
           PL++  +C + +  +++ +L  F   FT C+Y R I+G C
Sbjct: 61  PLKKCILCGKHVDYKNVQLLSQFVSPFTGCIYGRHITGLC 100


>U12170-1|AAA20602.1| 1124|Homo sapiens zinc finger homeodomain
           protein protein.
          Length = 1124

 Score = 29.9 bits (64), Expect = 9.3
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = -2

Query: 574 TSPRALLPADYPNPCWGCLAPHAARLASEARDSTTTSASPERCGED*ALPIVVTTPGLRT 395
           + P +  P     P      P +A  A+E +DST    SP +      LP+  TT G R+
Sbjct: 642 SEPSSPEPGKVNTPAKNNDQPQSAN-ANEPQDSTVNLQSPLKMTNSPVLPVGSTTNGSRS 700

Query: 394 VTP 386
            TP
Sbjct: 701 STP 703


>BC037582-1|AAH37582.1|  349|Homo sapiens ATXN7L2 protein protein.
          Length = 349

 Score = 29.9 bits (64), Expect = 9.3
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -2

Query: 613 SVAPVTLRAPCCGTSPRAL--LPADYPNPCWGCLAPHAARLASEARDSTTTSASPER 449
           SVA    +A C G S      LPA+ P+P +  L P  A  +S+ +D     A P R
Sbjct: 142 SVAAACSQAECMGGSQAITSPLPANTPSPSFSKLPPSKASKSSKGKDGVEVEA-PSR 197


>AL355145-2|CAI22938.1|  349|Homo sapiens ataxin 7-like 2 protein.
          Length = 349

 Score = 29.9 bits (64), Expect = 9.3
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -2

Query: 613 SVAPVTLRAPCCGTSPRAL--LPADYPNPCWGCLAPHAARLASEARDSTTTSASPER 449
           SVA    +A C G S      LPA+ P+P +  L P  A  +S+ +D     A P R
Sbjct: 142 SVAAACSQAECMGGSQAITSPLPANTPSPSFSKLPPSKASKSSKGKDGVEVEA-PSR 197


>AL355145-1|CAI22937.1|  722|Homo sapiens ataxin 7-like 2 protein.
          Length = 722

 Score = 29.9 bits (64), Expect = 9.3
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -2

Query: 613 SVAPVTLRAPCCGTSPRAL--LPADYPNPCWGCLAPHAARLASEARDSTTTSASPER 449
           SVA    +A C G S      LPA+ P+P +  L P  A  +S+ +D     A P R
Sbjct: 515 SVAAACSQAECMGGSQAITSPLPANTPSPSFSKLPPSKASKSSKGKDGVEVEA-PSR 570


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,150,610
Number of Sequences: 237096
Number of extensions: 1850055
Number of successful extensions: 5281
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5280
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8175213644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)