Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0358
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.53 
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          25   0.92 
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          25   0.92 
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          25   0.92 
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          25   0.92 
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          25   0.92 
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          25   0.92 
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          25   0.92 
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    25   0.92 
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    24   1.2  
AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    23   2.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.9  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   6.5  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    21   8.6  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    21   8.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -1

Query: 434  SPADRGDNAGPSDRDSDIFRTLPPT---LNPAFSADSEARRD 318
            SP+DRG N   SDR      T PPT   ++ A S D ++ RD
Sbjct: 1380 SPSDRGRNDDGSDR-----LTSPPTPLSISRAGSRDEDSTRD 1416


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 559 AREEKFHSRARAESPERHSRCGA 627
           ARE+K   R+++ SPE   R  A
Sbjct: 68  AREKKLSKRSKSRSPESRGRSNA 90


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 559 AREEKFHSRARAESPERHSRCGA 627
           ARE+K   R+++ SPE   R  A
Sbjct: 68  AREKKLSKRSKSRSPESRGRSNA 90


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 559 AREEKFHSRARAESPERHSRCGA 627
           ARE+K   R+++ SPE   R  A
Sbjct: 68  AREKKLSKRSKSRSPESRGRSNA 90


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 559 AREEKFHSRARAESPERHSRCGA 627
           ARE+K   R+++ SPE   R  A
Sbjct: 68  AREKKLSKRSKSRSPESRGRSNA 90


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 559 AREEKFHSRARAESPERHSRCGA 627
           ARE+K   R+++ SPE   R  A
Sbjct: 68  AREKKLSKRSKSRSPESRGRSNA 90


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 559 AREEKFHSRARAESPERHSRCGA 627
           ARE+K   R+++ SPE   R  A
Sbjct: 68  AREKKLSKRSKSRSPESRGRSNA 90


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 559 AREEKFHSRARAESPERHSRCGA 627
           ARE+K   R+++ SPE   R  A
Sbjct: 68  AREKKLSKRSKSRSPESRGRSNA 90


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 559 AREEKFHSRARAESPERHSRCGA 627
           ARE+K   R+++ SPE   R  A
Sbjct: 68  AREKKLSKRSKSRSPESRGRSNA 90


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 547 DYPNPCWGCLAPHAARLASE 488
           DYP+P W  + P A  L ++
Sbjct: 130 DYPSPEWDTVTPEAKNLINQ 149


>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.
          Length = 80

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -2

Query: 556 LPADYPNPCWGCLAPHAARLASEARDSTTTSAS 458
           +P     PC GC AP+  +        T+  AS
Sbjct: 12  MPKSLKEPCDGCAAPYGYKNIMTLSQDTSHFAS 44


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 201 STEAISLKTFQQKSHR 248
           S E ISL T QQK H+
Sbjct: 224 SDEDISLTTHQQKRHK 239


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -2

Query: 49  YCVSCGFH 26
           YCV+CG H
Sbjct: 542 YCVACGLH 549


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +2

Query: 347 RRGSTWEAGCGKYRSHGPKARRCHHDRQ 430
           +R   WE    KY S G   +R  H  Q
Sbjct: 93  KRPKDWERLSAKYDSTGEYKKRYEHGLQ 120


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +2

Query: 347 RRGSTWEAGCGKYRSHGPKARRCHHDRQ 430
           +R   WE    KY S G   +R  H  Q
Sbjct: 93  KRPKDWERLSAKYDSTGEYKKRYEHGLQ 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,131
Number of Sequences: 438
Number of extensions: 3414
Number of successful extensions: 19
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)