Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0355
         (445 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    23   1.3  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   1.7  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    22   2.3  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   3.0  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    21   4.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   6.9  

>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 74  NMIYNWACNNGFNNSVCTLFELR 142
           N++Y + C+N FN  +  +F  R
Sbjct: 156 NLVYVYCCDNNFNVFLRQVFTCR 178


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 355 PRQPHVAGKIMCNSWNHN 408
           PR+P VAG  +C+S + N
Sbjct: 103 PREPGVAGGDVCSSESFN 120


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 107 THYYMPSCKSYFPT 66
           TH++ P   +YFPT
Sbjct: 69  THWHSPRFHAYFPT 82


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +3

Query: 12  APLTRAKTCGRYIGTRWMSG 71
           AP+      GRY G R M G
Sbjct: 283 APIVAGGDAGRYTGERGMMG 302


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 171 FITLI*MSWSKH*SHWKPK 227
           F+ L+   +SKH S+W+ K
Sbjct: 9   FLLLLYYIYSKHYSYWQSK 27


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 141  EKEIIPLTKNFITLI*MSWSKH*SHW 218
            EK I+P  + FI +   S + H S W
Sbjct: 1489 EKPIVPSAEKFIEVSSNSITLHLSAW 1514


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,000
Number of Sequences: 336
Number of extensions: 2304
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9985735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)