Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0355
         (445 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.06 |vps25||ESCRT II complex subunit Vps25|Schizosaccharo...    62   5e-11
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    26   3.0  
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy...    26   3.0  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   5.2  
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun...    25   5.2  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   6.9  
SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   6.9  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    24   9.1  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    24   9.1  

>SPBC4B4.06 |vps25||ESCRT II complex subunit
           Vps25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 61.7 bits (143), Expect = 5e-11
 Identities = 32/73 (43%), Positives = 43/73 (58%)
 Frame = +2

Query: 29  KNVWEVYWHSLDEWGNMIYNWACNNGFNNSVCTLFELREGDNTADQEFHNLDMNVLVKAL 208
           K+V+ VYW S+ EWGNMI  W  + G   S+CT +EL+E      +E   LD  +L K L
Sbjct: 93  KDVFWVYWRSISEWGNMILKWLSDMGREGSICTFYELQE----QYKEVDCLDEVLLHKVL 148

Query: 209 KSLEAKGRCELME 247
           + L  KG  ELM+
Sbjct: 149 ELLMKKGNIELMK 161


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 65  EWGNMIYNWACNNGFNNSVCTLFELREGDNTA 160
           +W N I++W  + GF N+  T + + +G +T+
Sbjct: 201 DWANKIWDWTTDVGFVNT--TTYAVYDGADTS 230


>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 442

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 65  EWGNMIYNWACNNGFNNSVCTLFE 136
           EW N+ Y+W+   GF     T+F+
Sbjct: 206 EWANVAYDWSQRIGFIQEDYTVFD 229


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 98   YMPSCKSYFPTHPASANIPPT 36
            YMPS  SY PT P+ +   P+
Sbjct: 1571 YMPSSPSYSPTSPSYSPTSPS 1591


>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
           Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 176 NLDMNVLVKALKSLEAKGRCELMEFDDNQGVKFF*MNILRTRTELQHG 319
           NL ++V+ + LKSLE+K   + ++   N   K + +  L   TEL  G
Sbjct: 112 NLHVSVVDRCLKSLESKNLVKSIKSVKNPTRKIYMLYDLVPSTELTGG 159


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -3

Query: 347 KSPSYDLCWIHAAVPFSSLICSFKRTLHPGCHQIP*VRIDLW 222
           KSP  D+CW    V  + ++ + +  +    ++IP  R++ W
Sbjct: 413 KSPLIDVCWWRICVDEAQMVETSQSNVAQMIYRIP--RVNCW 452


>SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 268

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -2

Query: 312 CSSVLVLNMFI*KNFTPWL-SSNSMSSHRPLASSDFNALT 196
           C+  + L  +I KNF  W+ SS  +    P+A S   +LT
Sbjct: 40  CNDNITLYNWIPKNFGEWMPSSRDIEGINPIAESVAFSLT 79


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +2

Query: 23  KSKNVWEVYWHSLDEWGNMIYNW--ACNNGFNN 115
           K+KNV   Y+  LDEW ++  N+  A  +G NN
Sbjct: 304 KNKNV---YYSRLDEWLHITLNYGLALRSGSNN 333


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = +2

Query: 20  DKSKNVWEVYWHSLDEWGNMIYNWACNNGFNNSVCTLFEL 139
           D +K+   + W + D     +Y + C N     V   FE+
Sbjct: 95  DVNKDSITIMWDNPDFQDGTLYEFTCENCLQEGVAYTFEM 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,925,060
Number of Sequences: 5004
Number of extensions: 38439
Number of successful extensions: 125
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)