Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0355
         (445 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0129 - 26770543-26770720,26774592-26774719,26774829-267749...    59   1e-09
07_03_0843 - 21962223-21963815,21963957-21964607                       30   0.73 
10_08_0874 - 21205506-21205685,21205825-21205998,21206114-212062...    27   6.8  
07_03_0836 - 21856808-21858451,21858600-21859487,21860019-21860048     27   6.8  
03_05_0948 + 29087469-29087795,29088780-29088824,29088940-29088945     27   9.0  

>01_06_0129 -
           26770543-26770720,26774592-26774719,26774829-26774933,
           26775661-26775788,26777332-26777433,26778760-26778861,
           26779777-26779852,26779971-26780059,26780177-26780230,
           26780482-26780614,26780671-26780797,26781590-26781648
          Length = 426

 Score = 59.3 bits (137), Expect = 1e-09
 Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
 Frame = +2

Query: 2   WQGRP--IDKSKNVWEVYWHSLDEWGNMIYNWACNNGFNNSVCTLFELREGDNTADQEFH 175
           ++GR   +DK      + W  + +W N I N+  +NG  +SV T+ E+R G  T   E  
Sbjct: 123 YEGRAEWMDKGHKKCLILWLRIQDWANYILNFVKDNGLEDSVMTVEEIRSGIETRGTELA 182

Query: 176 NLDMNVLVKALKSLEAKGRCELME 247
            +D  VL++ALK LE KG+  + +
Sbjct: 183 GIDRGVLMRALKLLEQKGKAAIFK 206


>07_03_0843 - 21962223-21963815,21963957-21964607
          Length = 747

 Score = 30.3 bits (65), Expect = 0.73
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 10/45 (22%)
 Frame = +2

Query: 80  IYNWACNNGFNNS------VCTLFELREGDNTA----DQEFHNLD 184
           I N+ C++  NNS      +C + + REGDNTA     Q F N+D
Sbjct: 287 IINFDCDHYINNSQAFRAAICFMLDQREGDNTAFVQFPQRFDNVD 331


>10_08_0874 -
           21205506-21205685,21205825-21205998,21206114-21206249,
           21206622-21206794,21207612-21207839
          Length = 296

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 353 CKKSPSYDLCWIHAAV 306
           CK+ P YD  W+H+ V
Sbjct: 113 CKRQPGYDNMWLHSMV 128


>07_03_0836 - 21856808-21858451,21858600-21859487,21860019-21860048
          Length = 853

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 98  NNGFNNSVCTLFELREGDNTADQEF 172
           +  F   +C + + REGDNTA  +F
Sbjct: 388 SKAFRAGICFMLDRREGDNTAFVQF 412


>03_05_0948 + 29087469-29087795,29088780-29088824,29088940-29088945
          Length = 125

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 199 DQDIHIKVMKFLVSGIISFSQLKQCTN*IIKPIITC 92
           D+D+     K  +  IIS S LK  +N  IK I+ C
Sbjct: 90  DKDVRRGTKKIYLKTIISKSALKHASNPQIKSILKC 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,454,296
Number of Sequences: 37544
Number of extensions: 244186
Number of successful extensions: 537
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)