Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0355
         (445 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33345| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.57 
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_1223| Best HMM Match : HEAT (HMM E-Value=0.0012)                    28   3.0  
SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   5.3  
SB_52940| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_38361| Best HMM Match : VPS9 (HMM E-Value=0.0012)                   27   9.2  

>SB_33345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 728

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 268 KVLLNEHIKDENGTAAWIQQRS*LGDFLQPRQ-PHVAGKIMC 390
           K+   +HI    GT AW+Q R      ++ +Q  HV GK++C
Sbjct: 82  KIHTQQHIPQGTGTRAWVQTREVKKVQIKQKQWLHVFGKLVC 123


>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3287

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -3

Query: 359  RGCKKSPSYDLCWIHAAVPFSSL-ICSFKRTLHPGCHQI 246
            +GC K  ++   ++H   PFS   + S  R +  GCH I
Sbjct: 1652 QGCLKDLTFHYRYVHFLTPFSQQGLASILRNVTTGCHSI 1690


>SB_1223| Best HMM Match : HEAT (HMM E-Value=0.0012)
          Length = 467

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 9/20 (45%), Positives = 17/20 (85%)
 Frame = +2

Query: 185 MNVLVKALKSLEAKGRCELM 244
           +  L++A+K+ E++GRCE+M
Sbjct: 139 VQTLIRAMKNAESQGRCEIM 158


>SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 289 YVHLKELYTLVVIKFHEFAST 227
           Y H   L+ LVV++FH F ST
Sbjct: 406 YAHGDGLHVLVVLRFHAFTST 426


>SB_52940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
 Frame = -3

Query: 197 PGHSYQGYEILGQRYYLLLSAQTVYKLNY*THYY-MPSCKSYFPTHPASANIPPTRFCSC 21
           PGH Y GY + G  Y   +S ++ +      H + +P    Y P+      IP    C  
Sbjct: 43  PGHQYSGY-MYGAEYE--VSDRSPFTRGKALHEHDVPCAVCYVPSRSTQLMIPAVARCPA 99

Query: 20  QW 15
            W
Sbjct: 100 GW 101


>SB_38361| Best HMM Match : VPS9 (HMM E-Value=0.0012)
          Length = 882

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 233 CELMEFDDNQGVKFF*MNILRTRTELQHGSSKGHS 337
           CE+  F D   V+ F +N +R R++  +  S+  S
Sbjct: 646 CEMKRFSDTASVRSFFINTVRARSKTMNFESRSAS 680


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,375,206
Number of Sequences: 59808
Number of extensions: 290019
Number of successful extensions: 531
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)