Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0355
         (445 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82062-1|CAB04889.2|  183|Caenorhabditis elegans Hypothetical pr...    89   1e-18
Z83103-3|CAB05473.1|  376|Caenorhabditis elegans Hypothetical pr...    27   6.1  
Z81097-20|CAB03178.1|  417|Caenorhabditis elegans Hypothetical p...    27   8.1  
AL023833-1|CAA19477.1|  417|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF116530-1|AAD05571.1|  417|Caenorhabditis elegans synthetic mul...    27   8.1  
AF098999-6|AAC68724.2|  787|Caenorhabditis elegans Half transpor...    27   8.1  

>Z82062-1|CAB04889.2|  183|Caenorhabditis elegans Hypothetical
           protein W02A11.2 protein.
          Length = 183

 Score = 89.4 bits (212), Expect = 1e-18
 Identities = 38/86 (44%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
 Frame = +2

Query: 20  DKSKNVWEVYWHSLDEWGNMIYNWACNNGFNNSVCTLFELREGDNTADQEFHNLDMNVLV 199
           D  +  + ++W   D W NMIY WA  N F N+  TL+E+  GD+T ++ FHNL+  +L+
Sbjct: 97  DNGRTRFHIFWRRPDVWANMIYQWAVENAFINTPLTLYEITHGDDTTNESFHNLEREILM 156

Query: 200 KALKSLEAKGRCELMEF-DDNQGVKF 274
           KAL  LE + R +LM    DN+GVKF
Sbjct: 157 KALTCLEEQRRAQLMNIGGDNEGVKF 182


>Z83103-3|CAB05473.1|  376|Caenorhabditis elegans Hypothetical
           protein D1025.3 protein.
          Length = 376

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 113 NSVCTLFE-LREGDNTADQEFHNLDMNVLVKALKSLEAKGRCEL 241
           N+VC+  + LR+   T+   +HNL +      ++ L+ K RC+L
Sbjct: 8   NAVCSNDKVLRQRQMTSHSAWHNLPLQFRKGVIEILDYKTRCQL 51


>Z81097-20|CAB03178.1|  417|Caenorhabditis elegans Hypothetical
           protein K07A1.12 protein.
          Length = 417

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 44  VYWHSLDEWGNMIYNWACNNGFNNSVCTLFELREGDNTADQEFHNL 181
           V  H+L EW ++   W  +   +NS  T+  L  G +T+D++ H L
Sbjct: 32  VMTHAL-EWPSLSVQWLPDVAKDNSDHTIHRLILGTHTSDEQNHLL 76


>AL023833-1|CAA19477.1|  417|Caenorhabditis elegans Hypothetical
           protein K07A1.12 protein.
          Length = 417

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 44  VYWHSLDEWGNMIYNWACNNGFNNSVCTLFELREGDNTADQEFHNL 181
           V  H+L EW ++   W  +   +NS  T+  L  G +T+D++ H L
Sbjct: 32  VMTHAL-EWPSLSVQWLPDVAKDNSDHTIHRLILGTHTSDEQNHLL 76


>AF116530-1|AAD05571.1|  417|Caenorhabditis elegans synthetic
           multivulva protein LIN-53 p48 protein.
          Length = 417

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 44  VYWHSLDEWGNMIYNWACNNGFNNSVCTLFELREGDNTADQEFHNL 181
           V  H+L EW ++   W  +   +NS  T+  L  G +T+D++ H L
Sbjct: 32  VMTHAL-EWPSLSVQWLPDVAKDNSDHTIHRLILGTHTSDEQNHLL 76


>AF098999-6|AAC68724.2|  787|Caenorhabditis elegans Half transporter
           (pgp related)protein 4 protein.
          Length = 787

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 289 IKDENGTAAWIQQRS*LGDFLQPRQPHVA 375
           +KD NGT A + QR  +GD    ++P VA
Sbjct: 721 LKDTNGTYAKLVQRQMMGDQKPRKRPAVA 749


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,564,821
Number of Sequences: 27780
Number of extensions: 213144
Number of successful extensions: 503
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)