Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0355
         (445 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   1.1  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   1.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   4.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   4.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   4.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   4.6  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   6.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   6.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   6.1  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 5/13 (38%), Positives = 11/13 (84%)
 Frame = +2

Query: 17 IDKSKNVWEVYWH 55
          + + KN++E++WH
Sbjct: 32 VTRQKNIYELFWH 44


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 5/13 (38%), Positives = 11/13 (84%)
 Frame = +2

Query: 17 IDKSKNVWEVYWH 55
          + + KN++E++WH
Sbjct: 32 VTRQKNIYELFWH 44


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 170 FHNLDMNVLVKALKSLEAKGRCELMEFDD 256
           + N  +N L++    L  +GR  +  FDD
Sbjct: 169 YRNGTVNYLMRRHLILSCQGRLNIFPFDD 197



 Score = 21.4 bits (43), Expect = 4.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 445 WQNEFMALNKSPSYDSMS 392
           W+N+   L KSPS  S++
Sbjct: 218 WKNDEGTLRKSPSLTSLN 235


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 170 FHNLDMNVLVKALKSLEAKGRCELMEFDD 256
           + N  +N L++    L  +GR  +  FDD
Sbjct: 169 YRNGTVNYLMRRHLILSCQGRLNIFPFDD 197



 Score = 21.4 bits (43), Expect = 4.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 445 WQNEFMALNKSPSYDSMS 392
           W+N+   L KSPS  S++
Sbjct: 218 WKNDEGTLRKSPSLTSLN 235


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 170 FHNLDMNVLVKALKSLEAKGRCELMEFDD 256
           + N  +N L++    L  +GR  +  FDD
Sbjct: 220 YRNGTVNYLMRRHLILSCQGRLNIFPFDD 248



 Score = 21.4 bits (43), Expect = 4.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 445 WQNEFMALNKSPSYDSMS 392
           W+N+   L KSPS  S++
Sbjct: 269 WKNDEGTLRKSPSLTSLN 286


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 170 FHNLDMNVLVKALKSLEAKGRCELMEFDD 256
           + N  +N L++    L  +GR  +  FDD
Sbjct: 169 YRNGTVNYLMRRHLILSCQGRLNIFPFDD 197



 Score = 21.4 bits (43), Expect = 4.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 445 WQNEFMALNKSPSYDSMS 392
           W+N+   L KSPS  S++
Sbjct: 218 WKNDEGTLRKSPSLTSLN 235


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 403 DSMSYT*SYQLHEADVAVKSPL 338
           D+ SY     L  ADVAV +PL
Sbjct: 107 DNKSYLSLRSLLSADVAVATPL 128


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 320 IHAAVPFSSLICSFKR 273
           IH  +P+SSL   FKR
Sbjct: 596 IHYNLPYSSLYGRFKR 611


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 80  IYNWACNNGFNNSVCTLFELREGD 151
           + NW   N  N+ V + F  + GD
Sbjct: 345 VTNWVSGNHDNHRVASRFGRQRGD 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,082
Number of Sequences: 438
Number of extensions: 2647
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)