Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0355
         (445 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19003.2 68417.m02800 expressed protein contains Pfam PF05871...    64   3e-11
At4g19003.1 68417.m02799 expressed protein contains Pfam PF05871...    64   3e-11
At5g50390.1 68418.m06241 pentatricopeptide (PPR) repeat-containi...    27   4.3  
At4g30130.1 68417.m04283 expressed protein contains Pfam domains...    26   10.0 
At4g27010.1 68417.m03885 expressed protein  ; expression support...    26   10.0 

>At4g19003.2 68417.m02800 expressed protein contains Pfam PF05871:
           Eukaryotic protein of unknown function (DUF852)
          Length = 179

 Score = 64.5 bits (150), Expect = 3e-11
 Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
 Frame = +2

Query: 17  IDKSKNVWEVYWHSLDEWGNMIYNWACNNGFNNSVCTLFELREGDNTADQEFHNLDMNVL 196
           +DK      + WH + +W +++  +  +NG  +SV T+ E+R G  +   E   +D  +L
Sbjct: 90  LDKGHRKCLILWHRIQDWADIVLQFVRDNGLEDSVMTVEEIRSGTESLGTELQGIDRTIL 149

Query: 197 VKALKSLEAKGRCELME--FDDNQGVKF 274
           ++ALK LE KG+  L +    D++GVKF
Sbjct: 150 MRALKLLENKGKLALFKGTSADDEGVKF 177


>At4g19003.1 68417.m02799 expressed protein contains Pfam PF05871:
           Eukaryotic protein of unknown function (DUF852)
          Length = 179

 Score = 64.5 bits (150), Expect = 3e-11
 Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
 Frame = +2

Query: 17  IDKSKNVWEVYWHSLDEWGNMIYNWACNNGFNNSVCTLFELREGDNTADQEFHNLDMNVL 196
           +DK      + WH + +W +++  +  +NG  +SV T+ E+R G  +   E   +D  +L
Sbjct: 90  LDKGHRKCLILWHRIQDWADIVLQFVRDNGLEDSVMTVEEIRSGTESLGTELQGIDRTIL 149

Query: 197 VKALKSLEAKGRCELME--FDDNQGVKF 274
           ++ALK LE KG+  L +    D++GVKF
Sbjct: 150 MRALKLLENKGKLALFKGTSADDEGVKF 177


>At5g50390.1 68418.m06241 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 701

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/48 (22%), Positives = 25/48 (52%)
 Frame = +2

Query: 68  WGNMIYNWACNNGFNNSVCTLFELREGDNTADQEFHNLDMNVLVKALK 211
           W N+I  +A +     ++C L+++R+   + DQ   ++ + +  K  K
Sbjct: 293 WNNVIAGYALHGYSEEALCLLYDMRDSGVSIDQFTLSIMIRISTKLAK 340


>At4g30130.1 68417.m04283 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 725

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 14  PIDKSKNVWEVYWH---SLDEWGNMIYNWACNNGFNNSVCTLFELREGDNTADQE 169
           P     + W+ +W+   +LD++G   Y++   NG ++ +  L  +RE +   D E
Sbjct: 156 PPSPQNSQWDFFWNPFSALDQYG---YSYDNQNGMDDDMRRLRRVREEEGIPDLE 207


>At4g27010.1 68417.m03885 expressed protein  ; expression supported by
            MPSS
          Length = 2535

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +3

Query: 219  KPKVDA--NSWNLMTTRV*SSFK*TY*GRERNC 311
            KP +DA  NSW  +  +   SFK  Y G++  C
Sbjct: 1628 KPLLDALVNSWQCVVKKSDGSFKGNYEGKQDRC 1660


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,113,071
Number of Sequences: 28952
Number of extensions: 204333
Number of successful extensions: 455
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)