Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0354
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma...   235   5e-63
SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces...    29   0.90 
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    28   1.2  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    28   1.6  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.1  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    27   2.8  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    27   2.8  
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.8  
SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr 1|...    26   4.8  
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr...    26   6.4  
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    26   6.4  
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    26   6.4  

>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 354

 Score =  235 bits (575), Expect = 5e-63
 Identities = 118/215 (54%), Positives = 159/215 (73%), Gaps = 1/215 (0%)
 Frame = +3

Query: 24  DPYLASYGVEDPEFAITQLAQTTMRSEIGQISLDKVFRERESLNVSIVHAINKASEAWGI 203
           DPY ASYGVED ++AI+QLAQTTMRSEIG+++LD V RER+SLN+ I  AINKA+E+WGI
Sbjct: 126 DPYKASYGVEDADYAISQLAQTTMRSEIGRLTLDHVLRERQSLNIHITDAINKAAESWGI 185

Query: 204 TCLRYEIRDVKLPTRVHEAMQMQVEAERRKRAAILESEGVRAADINVAEGKRQSRILASE 383
            CLR+EIRD++ P  V  AM  QV AER+KRA ILESEG R A INVAEG +Q+ IL SE
Sbjct: 186 RCLRHEIRDIRPPESVVMAMHQQVSAERQKRAEILESEGKRQAAINVAEGDKQAEILDSE 245

Query: 384 AEKQEQINKAAGEAQAMLAVAEARSRGLKLIAHALADRD-SRHAASLTLAEQYVSAFNKL 560
            +K + IN A  EAQA+   A A + G+ ++A ++  ++    A SL +A+QY++ F KL
Sbjct: 246 GQKIKTINSALAEAQAIREKASATASGIAVLADSIKKQEHGLEAVSLYIAQQYITNFGKL 305

Query: 561 ARTNNTLILPANAGDVSNLVAQAMSIYSTVTAHNA 665
           A+ +N++I+PA+  DVS +VAQA+SI+  V+   A
Sbjct: 306 AKASNSMIVPASTSDVSGMVAQALSIFKQVSKTTA 340


>SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 108

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 16/75 (21%), Positives = 37/75 (49%)
 Frame = +3

Query: 237 LPTRVHEAMQMQVEAERRKRAAILESEGVRAADINVAEGKRQSRILASEAEKQEQINKAA 416
           +  + +  +Q  +EAE+  R  + ++   R   +  A  + +  I    ++K+E+  K+ 
Sbjct: 1   MSAQTNSGIQQLLEAEKVARNIVEKARQHRTQRLKDARLEAKREIDEYASKKEEEFKKSE 60

Query: 417 GEAQAMLAVAEARSR 461
            +A  + + AEA S+
Sbjct: 61  SQASGIYSQAEAESK 75


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 10/134 (7%)
 Frame = +3

Query: 99  SEIGQISLDKVFRERESLNVSIVHAINKASEAWGITC-LRYE-IRDVKLPTRVHEA---- 260
           +E+   S D       S N S++H+ + ASEA    C L YE  R  ++     EA    
Sbjct: 19  NELCSSSTDITSLSVSSPNESVIHSSHSASEADEYVCKLSYEGNRKKRIYNGSAEAGKEK 78

Query: 261 ----MQMQVEAERRKRAAILESEGVRAADINVAEGKRQSRILASEAEKQEQINKAAGEAQ 428
                + Q E  R+K A  L+ E  R       + + Q +I A + ++ E++ K     Q
Sbjct: 79  KLQKQRAQEERIRQKEAERLKREKERQQREQEKKLREQEKIAAKKMKELEKLEKERIRLQ 138

Query: 429 AMLAVAEARSRGLK 470
                 E R + L+
Sbjct: 139 EQQRRKEERDQKLR 152


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +3

Query: 537 YVSAFNKLARTNNTL-ILPANAGDVSN-LVAQAMSIYSTVTAHNAQS 671
           Y S F     T+ T+ ++   AG V+  +++ ++S  ST+TAH+  S
Sbjct: 749 YTSTFPASGTTSGTVEVVEPTAGTVTETVISGSVSFMSTITAHDTSS 795


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = -3

Query: 397 SCFSASEASILDWRFPSATLMSAARTPSDSSMAARFRLSASTCICIASCTRVGSLTS 227
           S  S+S A+       S++  S++ TP  SS+ +    SAS+ +  +S +  GS++S
Sbjct: 140 SSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSGSISS 196


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
 Frame = +3

Query: 270 QVEAERRKRAAILESEGVRAADINVAEGKRQSRILASEAEKQEQ--INKAAGE-AQAMLA 440
           + E E +KR+     + + A      E K + RILA E +K     + K+  E AQAM  
Sbjct: 32  ETEEEIKKRSPEELKQAIEALREKAKEKKEKERILALEEKKTNYKILQKSNDETAQAMRK 91

Query: 441 VA-EARSRGLKLIAHALAD 494
           +  +AR R L+ I    A+
Sbjct: 92  MQDQARLRDLQKIRQQKAE 110


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = +3

Query: 285 RRKRAAILE--SEGVRAADINVAEGKRQSRILASEAEKQEQINKAAGEAQAMLA 440
           RRKR+  +   +E V+   IN   G+R+SR  A+  +K+E  NK+   +Q  L+
Sbjct: 637 RRKRSNSITQLTEFVKQPKIN---GQRESRSAAAARKKEESGNKSQSNSQNSLS 687


>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/63 (20%), Positives = 29/63 (46%)
 Frame = +3

Query: 459 RGLKLIAHALADRDSRHAASLTLAEQYVSAFNKLARTNNTLILPANAGDVSNLVAQAMSI 638
           +GL  +   +A R+  H   + +    ++    +  +++ L    + GD  NL   A+ +
Sbjct: 340 QGLFFLLLGIAFREIFHIEVMRIRHSQLNLMRDIKESSSGLTSAKSLGDAQNLCENAVRL 399

Query: 639 YST 647
           YS+
Sbjct: 400 YSS 402


>SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 29/136 (21%), Positives = 60/136 (44%)
 Frame = +3

Query: 45  GVEDPEFAITQLAQTTMRSEIGQISLDKVFRERESLNVSIVHAINKASEAWGITCLRYEI 224
           G++  E  +  +    ++S + Q    ++  +RE ++  I   + + +  +GI      +
Sbjct: 110 GLDYDERVLPSIGNEILKSVVAQFDAAELITQREVVSAKIRQELVQRATEFGI-----RL 164

Query: 225 RDVKLPTRVHEAMQMQVEAERRKRAAILESEGVRAADINVAEGKRQSRILASEAEKQEQI 404
            DV + T +    +     ER++   I + E  RA  +          +  SE E+Q  +
Sbjct: 165 EDVSI-THMTFGKEFTKAVERKQ---IAQQEAERARFL----------VEQSEQERQANV 210

Query: 405 NKAAGEAQAMLAVAEA 452
            +A GEA+A   V++A
Sbjct: 211 IRAEGEAEAADIVSKA 226


>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +3

Query: 249 VHEAMQMQVEAERRKRAAILESEGVRAADINVAEGKRQSRILASEAEKQEQ 401
           V EAM    E+E+ +++A L +EG    ++N  E   +S ++  E  K  +
Sbjct: 438 VEEAMISWPESEKVEKSAQLVAEGKIIVNVNGVEHTVESDLVTIEKRKHTE 488


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 24  DPYLASYGVEDPEFAITQLAQTTMRSEI 107
           D Y  +Y VED + + T++ QT +  E+
Sbjct: 441 DAYTVAYIVEDEDESFTEVTQTIISQEV 468


>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 316 SDSSMAARFRLSASTCIC 263
           +D+ MA +FR S  TC+C
Sbjct: 288 ADALMACKFRGSGQTCVC 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,681,522
Number of Sequences: 5004
Number of extensions: 49315
Number of successful extensions: 145
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)