Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0354
(732 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81072-4|CAB03018.2| 327|Caenorhabditis elegans Hypothetical pr... 262 2e-70
U40409-9|AAA81390.3| 314|Caenorhabditis elegans Stomatin protei... 77 1e-14
U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protei... 75 5e-14
U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protei... 75 5e-14
U55375-2|AAC69044.2| 285|Caenorhabditis elegans Uncoordinated p... 73 2e-13
EF538426-1|ABQ08183.1| 289|Caenorhabditis elegans stomatin-like... 73 2e-13
AC006638-4|AAP82654.1| 312|Caenorhabditis elegans Stomatin prot... 72 4e-13
AC006638-3|AAK85483.1| 367|Caenorhabditis elegans Stomatin prot... 72 4e-13
U41021-3|AAV28352.1| 317|Caenorhabditis elegans Mechanosensory ... 71 8e-13
U41021-2|AAM54192.1| 392|Caenorhabditis elegans Mechanosensory ... 71 8e-13
U41021-1|AAA82333.1| 481|Caenorhabditis elegans Mechanosensory ... 71 8e-13
U26736-1|AAA87552.1| 481|Caenorhabditis elegans MEC-2 protein. 71 8e-13
U26735-1|AAA87551.1| 481|Caenorhabditis elegans MEC-2 protein. 71 8e-13
Z66565-10|CAB76415.1| 281|Caenorhabditis elegans Hypothetical p... 69 3e-12
AL032659-2|CAB82215.1| 281|Caenorhabditis elegans Hypothetical ... 69 3e-12
Z66564-4|CAA91476.1| 267|Caenorhabditis elegans Hypothetical pr... 66 2e-11
AL032659-1|CAA21750.1| 298|Caenorhabditis elegans Hypothetical ... 62 3e-10
AC006638-5|AAP82655.1| 175|Caenorhabditis elegans Stomatin prot... 34 0.12
Z48006-1|CAA88047.1| 642|Caenorhabditis elegans Hypothetical pr... 31 0.84
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 29 2.6
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 2.6
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 2.6
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 29 3.4
U55364-1|AAA97970.2| 226|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z99281-5|CAB54457.1| 553|Caenorhabditis elegans Hypothetical pr... 28 5.9
AF025468-2|AAF02174.2| 342|Caenorhabditis elegans Serpentine re... 28 5.9
AF022971-9|AAG23978.2| 345|Caenorhabditis elegans Serpentine re... 28 7.8
>Z81072-4|CAB03018.2| 327|Caenorhabditis elegans Hypothetical
protein F30A10.5 protein.
Length = 327
Score = 262 bits (642), Expect = 2e-70
Identities = 128/213 (60%), Positives = 171/213 (80%), Gaps = 3/213 (1%)
Frame = +3
Query: 24 DPYLA---SYGVEDPEFAITQLAQTTMRSEIGQISLDKVFRERESLNVSIVHAINKASEA 194
DPY A SYGV+DPEFA+TQLAQTTMRSE+G+I+LD VF+ERE LN +IV AINKAS
Sbjct: 111 DPYKACDASYGVDDPEFAVTQLAQTTMRSEVGKINLDTVFKERELLNENIVFAINKASAP 170
Query: 195 WGITCLRYEIRDVKLPTRVHEAMQMQVEAERRKRAAILESEGVRAADINVAEGKRQSRIL 374
WGI C+RYEIRD+++P+++ EAMQMQVEAER+KRAAILESEG+R A IN AEG ++S IL
Sbjct: 171 WGIQCMRYEIRDMQMPSKIQEAMQMQVEAERKKRAAILESEGIREAAINRAEGDKKSAIL 230
Query: 375 ASEAEKQEQINKAAGEAQAMLAVAEARSRGLKLIAHALADRDSRHAASLTLAEQYVSAFN 554
ASEA + E+IN A GEA+A++ AE+R++ ++ IA AL +AA LT+AEQYV AF
Sbjct: 231 ASEAVQAERINVAKGEAEAVILKAESRAKAIERIALALEKDGGANAAGLTVAEQYVGAFG 290
Query: 555 KLARTNNTLILPANAGDVSNLVAQAMSIYSTVT 653
LA+ +NT++LPAN D ++V+QA+++Y +++
Sbjct: 291 NLAKESNTVVLPANLSDPGSMVSQALAVYDSLS 323
>U40409-9|AAA81390.3| 314|Caenorhabditis elegans Stomatin protein 2
protein.
Length = 314
Score = 77.0 bits (181), Expect = 1e-14
Identities = 37/95 (38%), Positives = 61/95 (64%)
Frame = +3
Query: 48 VEDPEFAITQLAQTTMRSEIGQISLDKVFRERESLNVSIVHAINKASEAWGITCLRYEIR 227
VE+ + LAQTT+R+ +G SL ++ +RE+L S+ +++A+E+WGI R EI+
Sbjct: 175 VENAHHSTRLLAQTTLRNMLGTRSLSEILSDRETLAASMQTILDEATESWGIKVERVEIK 234
Query: 228 DVKLPTRVHEAMQMQVEAERRKRAAILESEGVRAA 332
DV+LP ++ AM + EA R RA ++ +EG + A
Sbjct: 235 DVRLPIQLQRAMAAEAEATREARAKVIAAEGEQKA 269
>U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protein
1, isoform a protein.
Length = 330
Score = 74.9 bits (176), Expect = 5e-14
Identities = 38/109 (34%), Positives = 65/109 (59%)
Frame = +3
Query: 24 DPYLASYGVEDPEFAITQLAQTTMRSEIGQISLDKVFRERESLNVSIVHAINKASEAWGI 203
DP + GV + + LAQTT+R+ +G +L ++ +RE ++ + ++++A+E WGI
Sbjct: 137 DPITSVVGVGNATDSTKLLAQTTLRTILGTHTLSEILSDREKISADMKISLDEATEPWGI 196
Query: 204 TCLRYEIRDVKLPTRVHEAMQMQVEAERRKRAAILESEGVRAADINVAE 350
R E+RDV+LP+++ AM + EA R A I+ +EG A +AE
Sbjct: 197 KVERVELRDVRLPSQMQRAMAAEAEATRDAGAKIIAAEGELRASAALAE 245
>U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protein
1, isoform b protein.
Length = 325
Score = 74.9 bits (176), Expect = 5e-14
Identities = 38/109 (34%), Positives = 65/109 (59%)
Frame = +3
Query: 24 DPYLASYGVEDPEFAITQLAQTTMRSEIGQISLDKVFRERESLNVSIVHAINKASEAWGI 203
DP + GV + + LAQTT+R+ +G +L ++ +RE ++ + ++++A+E WGI
Sbjct: 137 DPITSVVGVGNATDSTKLLAQTTLRTILGTHTLSEILSDREKISADMKISLDEATEPWGI 196
Query: 204 TCLRYEIRDVKLPTRVHEAMQMQVEAERRKRAAILESEGVRAADINVAE 350
R E+RDV+LP+++ AM + EA R A I+ +EG A +AE
Sbjct: 197 KVERVELRDVRLPSQMQRAMAAEAEATRDAGAKIIAAEGELRASAALAE 245
>U55375-2|AAC69044.2| 285|Caenorhabditis elegans Uncoordinated
protein 1 protein.
Length = 285
Score = 72.9 bits (171), Expect = 2e-13
Identities = 39/135 (28%), Positives = 73/135 (54%), Gaps = 2/135 (1%)
Frame = +3
Query: 24 DPYLASYGVEDPEFAITQLAQTTMRSEIGQISLDKVFRERESLNVSIVHAINKASEAWGI 203
DP + V+D ++ LAQTT+R+ +G +L ++ ERE++ +++ +E WG+
Sbjct: 129 DPIASVNNVDDAIYSTKLLAQTTLRNALGMKTLTEMLTEREAIAQLCETILDEGTEHWGV 188
Query: 204 TCLRYEIRDVKLPTRVHEAMQMQVEAERRKRAAILESEGVRAAD--INVAEGKRQSRILA 377
R E++D++LP ++ AM + EA R RA ++ +EG + A + A Q+ +A
Sbjct: 189 KVERVEVKDIRLPQQLTRAMAAEAEAAREARAKVVAAEGEQKASRALKEAADVIQANPVA 248
Query: 378 SEAEKQEQINKAAGE 422
+ + +N A E
Sbjct: 249 LQLRHLQALNSIAAE 263
>EF538426-1|ABQ08183.1| 289|Caenorhabditis elegans stomatin-like
protein UNC-1 protein.
Length = 289
Score = 72.9 bits (171), Expect = 2e-13
Identities = 39/135 (28%), Positives = 73/135 (54%), Gaps = 2/135 (1%)
Frame = +3
Query: 24 DPYLASYGVEDPEFAITQLAQTTMRSEIGQISLDKVFRERESLNVSIVHAINKASEAWGI 203
DP + V+D ++ LAQTT+R+ +G +L ++ ERE++ +++ +E WG+
Sbjct: 133 DPIASVNNVDDAIYSTKLLAQTTLRNALGMKTLTEMLTEREAIAQLCETILDEGTEHWGV 192
Query: 204 TCLRYEIRDVKLPTRVHEAMQMQVEAERRKRAAILESEGVRAAD--INVAEGKRQSRILA 377
R E++D++LP ++ AM + EA R RA ++ +EG + A + A Q+ +A
Sbjct: 193 KVERVEVKDIRLPQQLTRAMAAEAEAAREARAKVVAAEGEQKASRALKEAADVIQANPVA 252
Query: 378 SEAEKQEQINKAAGE 422
+ + +N A E
Sbjct: 253 LQLRHLQALNSIAAE 267
>AC006638-4|AAP82654.1| 312|Caenorhabditis elegans Stomatin protein
5, isoform b protein.
Length = 312
Score = 72.1 bits (169), Expect = 4e-13
Identities = 33/103 (32%), Positives = 64/103 (62%)
Frame = +3
Query: 24 DPYLASYGVEDPEFAITQLAQTTMRSEIGQISLDKVFRERESLNVSIVHAINKASEAWGI 203
+P ++ V D +F+ LAQTT+R+ +G +L ++ ER+++ +++ ++ WG+
Sbjct: 208 NPVISVTNVNDAQFSTRLLAQTTLRNVLGTKTLSEMLSERDAIASISEKVLDEGTDPWGV 267
Query: 204 TCLRYEIRDVKLPTRVHEAMQMQVEAERRKRAAILESEGVRAA 332
R EI+D++LP ++ +M + EA RR RAAI+ ++G + A
Sbjct: 268 KVERVEIKDIRLPHQLMRSMAAKAEAVRRARAAIIAAQGEKDA 310
>AC006638-3|AAK85483.1| 367|Caenorhabditis elegans Stomatin protein
5, isoform a protein.
Length = 367
Score = 72.1 bits (169), Expect = 4e-13
Identities = 33/103 (32%), Positives = 64/103 (62%)
Frame = +3
Query: 24 DPYLASYGVEDPEFAITQLAQTTMRSEIGQISLDKVFRERESLNVSIVHAINKASEAWGI 203
+P ++ V D +F+ LAQTT+R+ +G +L ++ ER+++ +++ ++ WG+
Sbjct: 208 NPVISVTNVNDAQFSTRLLAQTTLRNVLGTKTLSEMLSERDAIASISEKVLDEGTDPWGV 267
Query: 204 TCLRYEIRDVKLPTRVHEAMQMQVEAERRKRAAILESEGVRAA 332
R EI+D++LP ++ +M + EA RR RAAI+ ++G + A
Sbjct: 268 KVERVEIKDIRLPHQLMRSMAAKAEAVRRARAAIIAAQGEKDA 310
>U41021-3|AAV28352.1| 317|Caenorhabditis elegans Mechanosensory
abnormality protein2, isoform c protein.
Length = 317
Score = 70.9 bits (166), Expect = 8e-13
Identities = 33/95 (34%), Positives = 60/95 (63%)
Frame = +3
Query: 48 VEDPEFAITQLAQTTMRSEIGQISLDKVFRERESLNVSIVHAINKASEAWGITCLRYEIR 227
VED + LAQTT+R+ +G +L ++ +RE+++ + +++A+E WG+ R E++
Sbjct: 148 VEDAARSTKLLAQTTLRNILGTKTLAEMLSDREAISHQMQTTLDEATEPWGVKVERVEVK 207
Query: 228 DVKLPTRVHEAMQMQVEAERRKRAAILESEGVRAA 332
DV+LP ++ AM + EA R RA ++ +EG + A
Sbjct: 208 DVRLPVQLQRAMAAEAEAAREARAKVIVAEGEQKA 242
>U41021-2|AAM54192.1| 392|Caenorhabditis elegans Mechanosensory
abnormality protein2, isoform b protein.
Length = 392
Score = 70.9 bits (166), Expect = 8e-13
Identities = 33/95 (34%), Positives = 60/95 (63%)
Frame = +3
Query: 48 VEDPEFAITQLAQTTMRSEIGQISLDKVFRERESLNVSIVHAINKASEAWGITCLRYEIR 227
VED + LAQTT+R+ +G +L ++ +RE+++ + +++A+E WG+ R E++
Sbjct: 223 VEDAARSTKLLAQTTLRNILGTKTLAEMLSDREAISHQMQTTLDEATEPWGVKVERVEVK 282
Query: 228 DVKLPTRVHEAMQMQVEAERRKRAAILESEGVRAA 332
DV+LP ++ AM + EA R RA ++ +EG + A
Sbjct: 283 DVRLPVQLQRAMAAEAEAAREARAKVIVAEGEQKA 317
>U41021-1|AAA82333.1| 481|Caenorhabditis elegans Mechanosensory
abnormality protein2, isoform a protein.
Length = 481
Score = 70.9 bits (166), Expect = 8e-13
Identities = 33/95 (34%), Positives = 60/95 (63%)
Frame = +3
Query: 48 VEDPEFAITQLAQTTMRSEIGQISLDKVFRERESLNVSIVHAINKASEAWGITCLRYEIR 227
VED + LAQTT+R+ +G +L ++ +RE+++ + +++A+E WG+ R E++
Sbjct: 223 VEDAARSTKLLAQTTLRNILGTKTLAEMLSDREAISHQMQTTLDEATEPWGVKVERVEVK 282
Query: 228 DVKLPTRVHEAMQMQVEAERRKRAAILESEGVRAA 332
DV+LP ++ AM + EA R RA ++ +EG + A
Sbjct: 283 DVRLPVQLQRAMAAEAEAAREARAKVIVAEGEQKA 317
>U26736-1|AAA87552.1| 481|Caenorhabditis elegans MEC-2 protein.
Length = 481
Score = 70.9 bits (166), Expect = 8e-13
Identities = 33/95 (34%), Positives = 60/95 (63%)
Frame = +3
Query: 48 VEDPEFAITQLAQTTMRSEIGQISLDKVFRERESLNVSIVHAINKASEAWGITCLRYEIR 227
VED + LAQTT+R+ +G +L ++ +RE+++ + +++A+E WG+ R E++
Sbjct: 223 VEDAARSTKLLAQTTLRNILGTKTLAEMLSDREAISHQMQTTLDEATEPWGVKVERVEVK 282
Query: 228 DVKLPTRVHEAMQMQVEAERRKRAAILESEGVRAA 332
DV+LP ++ AM + EA R RA ++ +EG + A
Sbjct: 283 DVRLPVQLQRAMAAEAEAAREARAKVIVAEGEQKA 317
>U26735-1|AAA87551.1| 481|Caenorhabditis elegans MEC-2 protein.
Length = 481
Score = 70.9 bits (166), Expect = 8e-13
Identities = 33/95 (34%), Positives = 60/95 (63%)
Frame = +3
Query: 48 VEDPEFAITQLAQTTMRSEIGQISLDKVFRERESLNVSIVHAINKASEAWGITCLRYEIR 227
VED + LAQTT+R+ +G +L ++ +RE+++ + +++A+E WG+ R E++
Sbjct: 223 VEDAARSTKLLAQTTLRNILGTKTLAEMLSDREAISHQMQTTLDEATEPWGVKVERVEVK 282
Query: 228 DVKLPTRVHEAMQMQVEAERRKRAAILESEGVRAA 332
DV+LP ++ AM + EA R RA ++ +EG + A
Sbjct: 283 DVRLPVQLQRAMAAEAEAAREARAKVIVAEGEQKA 317
>Z66565-10|CAB76415.1| 281|Caenorhabditis elegans Hypothetical
protein Y71H9A.3 protein.
Length = 281
Score = 69.3 bits (162), Expect = 3e-12
Identities = 34/101 (33%), Positives = 63/101 (62%)
Frame = +3
Query: 48 VEDPEFAITQLAQTTMRSEIGQISLDKVFRERESLNVSIVHAINKASEAWGITCLRYEIR 227
VED + LAQTT+R+ +G +L ++ R+++++ + A+++A++ WG+ R EI+
Sbjct: 132 VEDAARSTKLLAQTTLRNFLGTRTLAEMLSSRDAISMQMQAALDEATDPWGVKVERVEIK 191
Query: 228 DVKLPTRVHEAMQMQVEAERRKRAAILESEGVRAADINVAE 350
DV+LP ++ AM + EA R A I+ +EG + A +A+
Sbjct: 192 DVRLPIQLQRAMAAEAEAARAAGAKIIAAEGEQLASRALAD 232
>AL032659-2|CAB82215.1| 281|Caenorhabditis elegans Hypothetical
protein Y71H9A.3 protein.
Length = 281
Score = 69.3 bits (162), Expect = 3e-12
Identities = 34/101 (33%), Positives = 63/101 (62%)
Frame = +3
Query: 48 VEDPEFAITQLAQTTMRSEIGQISLDKVFRERESLNVSIVHAINKASEAWGITCLRYEIR 227
VED + LAQTT+R+ +G +L ++ R+++++ + A+++A++ WG+ R EI+
Sbjct: 132 VEDAARSTKLLAQTTLRNFLGTRTLAEMLSSRDAISMQMQAALDEATDPWGVKVERVEIK 191
Query: 228 DVKLPTRVHEAMQMQVEAERRKRAAILESEGVRAADINVAE 350
DV+LP ++ AM + EA R A I+ +EG + A +A+
Sbjct: 192 DVRLPIQLQRAMAAEAEAARAAGAKIIAAEGEQLASRALAD 232
>Z66564-4|CAA91476.1| 267|Caenorhabditis elegans Hypothetical
protein F52D10.5 protein.
Length = 267
Score = 66.1 bits (154), Expect = 2e-11
Identities = 31/99 (31%), Positives = 57/99 (57%)
Frame = +3
Query: 24 DPYLASYGVEDPEFAITQLAQTTMRSEIGQISLDKVFRERESLNVSIVHAINKASEAWGI 203
DP + V D + QLAQ+++R+ +G SL ++ +R + V + + ++ A+ WGI
Sbjct: 113 DPIASLARVNDAHMSTRQLAQSSLRNVLGTRSLAELMTDRHGIAVQVKYILDSATLFWGI 172
Query: 204 TCLRYEIRDVKLPTRVHEAMQMQVEAERRKRAAILESEG 320
R EI+D++LP + AM + EA+R A ++ ++G
Sbjct: 173 HVERVEIKDIRLPREMCRAMAAEAEAQRESDAKVVTAQG 211
>AL032659-1|CAA21750.1| 298|Caenorhabditis elegans Hypothetical
protein Y71H9A.2 protein.
Length = 298
Score = 62.5 bits (145), Expect = 3e-10
Identities = 30/101 (29%), Positives = 59/101 (58%)
Frame = +3
Query: 48 VEDPEFAITQLAQTTMRSEIGQISLDKVFRERESLNVSIVHAINKASEAWGITCLRYEIR 227
+ED + LAQTT+R+ +G +L ++ +R+ +++ + +++ + WG+ R E++
Sbjct: 137 IEDAARSTKLLAQTTLRNILGTKTLTEMLSDRDVISLQMQATLDETTIPWGVKVERVEMK 196
Query: 228 DVKLPTRVHEAMQMQVEAERRKRAAILESEGVRAADINVAE 350
DV+LP ++ M + EA R A I+ +EG + A +AE
Sbjct: 197 DVRLPYQLQRVMAAEAEATRDAMAKIIAAEGEKNASTALAE 237
>AC006638-5|AAP82655.1| 175|Caenorhabditis elegans Stomatin protein
5, isoform c protein.
Length = 175
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/43 (32%), Positives = 28/43 (65%)
Frame = +3
Query: 24 DPYLASYGVEDPEFAITQLAQTTMRSEIGQISLDKVFRERESL 152
+P ++ V D +F+ LAQTT+R+ +G +L ++ ER+++
Sbjct: 124 NPVISVTNVNDAQFSTRLLAQTTLRNVLGTKTLSEMLSERDAI 166
>Z48006-1|CAA88047.1| 642|Caenorhabditis elegans Hypothetical
protein F19C6.1 protein.
Length = 642
Score = 31.1 bits (67), Expect = 0.84
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 195 WGITCLRYEIRDVKLPTRVHEAMQMQVEAERRKR 296
WG+ CL YE+ + K P R + + E ERR R
Sbjct: 386 WGVGCLIYEMIEGKAPFRQRKEKVKREEVERRVR 419
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 29.5 bits (63), Expect = 2.6
Identities = 31/99 (31%), Positives = 44/99 (44%)
Frame = +3
Query: 138 ERESLNVSIVHAINKASEAWGITCLRYEIRDVKLPTRVHEAMQMQVEAERRKRAAILESE 317
E E+ NV+ V K E L EI K + +++ EA + KRAA E +
Sbjct: 9344 ESETQNVAAVDKEKKQKETDEKQKLEAEIAGKK---STEQKSKLEAEA-KLKRAA--EED 9397
Query: 318 GVRAADINVAEGKRQSRILASEAEKQEQINKAAGEAQAM 434
+ +++ E EKQ QINKAA EA A+
Sbjct: 9398 AAKKQKEKTEAASKKAAAEKLELEKQAQINKAA-EADAV 9435
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 29.5 bits (63), Expect = 2.6
Identities = 31/99 (31%), Positives = 44/99 (44%)
Frame = +3
Query: 138 ERESLNVSIVHAINKASEAWGITCLRYEIRDVKLPTRVHEAMQMQVEAERRKRAAILESE 317
E E+ NV+ V K E L EI K + +++ EA + KRAA E +
Sbjct: 9364 ESETQNVAAVDKEKKQKETDEKQKLEAEIAGKK---STEQKSKLEAEA-KLKRAA--EED 9417
Query: 318 GVRAADINVAEGKRQSRILASEAEKQEQINKAAGEAQAM 434
+ +++ E EKQ QINKAA EA A+
Sbjct: 9418 AAKKQKEKTEAASKKAAAEKLELEKQAQINKAA-EADAV 9455
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 29.5 bits (63), Expect = 2.6
Identities = 31/99 (31%), Positives = 44/99 (44%)
Frame = +3
Query: 138 ERESLNVSIVHAINKASEAWGITCLRYEIRDVKLPTRVHEAMQMQVEAERRKRAAILESE 317
E E+ NV+ V K E L EI K + +++ EA + KRAA E +
Sbjct: 9364 ESETQNVAAVDKEKKQKETDEKQKLEAEIAGKK---STEQKSKLEAEA-KLKRAA--EED 9417
Query: 318 GVRAADINVAEGKRQSRILASEAEKQEQINKAAGEAQAM 434
+ +++ E EKQ QINKAA EA A+
Sbjct: 9418 AAKKQKEKTEAASKKAAAEKLELEKQAQINKAA-EADAV 9455
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +3
Query: 342 VAEGKRQSRILASEAEKQEQINKAAGEAQAMLAVAEARSRGLKLIAHALADRDSRHAASL 521
++E K+ + K Q+ KAA + AMLA + SRG A R+S A S
Sbjct: 1 MSERKKSLITTINNQRKYSQVAKAAVLSSAMLARKNSSSRGAPGSAAGFGARESIAAISD 60
Query: 522 TLAEQY 539
L+ Q+
Sbjct: 61 MLSSQH 66
>U55364-1|AAA97970.2| 226|Caenorhabditis elegans Hypothetical
protein F21C10.10 protein.
Length = 226
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 486 LADRDSRHAASLTLAEQYVSAFNKLARTNNTLILPANA 599
L++ DSR A L L Q V + L++ +TL+ P NA
Sbjct: 175 LSEEDSRVADRLVLDMQQVEKSSSLSKLISTLVTPLNA 212
>Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical
protein Y57G11C.9b protein.
Length = 625
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +3
Query: 189 EAWGITCLRYEIRDVKLPTRVHEAMQMQVEAERRKRAAILESEGVRAADINVAEGKRQSR 368
E G C RD++ A Q++ ++RR+R + + R+A V G+ +SR
Sbjct: 114 EFMGCRCDLSWFRDIRRYCAYQRAKQVRSNSQRRRRRSDSQESSKRSASPPVRRGRSKSR 173
>Z99281-5|CAB54457.1| 553|Caenorhabditis elegans Hypothetical
protein Y57G11C.9a protein.
Length = 553
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +3
Query: 189 EAWGITCLRYEIRDVKLPTRVHEAMQMQVEAERRKRAAILESEGVRAADINVAEGKRQSR 368
E G C RD++ A Q++ ++RR+R + + R+A V G+ +SR
Sbjct: 114 EFMGCRCDLSWFRDIRRYCAYQRAKQVRSNSQRRRRRSDSQESSKRSASPPVRRGRSKSR 173
>AF025468-2|AAF02174.2| 342|Caenorhabditis elegans Serpentine
receptor, class h protein308 protein.
Length = 342
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/69 (21%), Positives = 31/69 (44%)
Frame = -3
Query: 247 RVGSLTSRISYLKQVIPQASLALLMACTIDTFKDSLSLNTLSKEICPISDRIVVCANCVI 68
R+ ++R+ Y ++ A ++ + +S L TLS CP + ++ ++
Sbjct: 143 RISRRSTRLLYYTFLLIPYYAAFIVIVLVGESSNSAKLKTLSHYPCPTREFFILPVFILL 202
Query: 67 ANSGSSTPY 41
N GS + Y
Sbjct: 203 VNGGSESLY 211
>AF022971-9|AAG23978.2| 345|Caenorhabditis elegans Serpentine
receptor, class h protein38 protein.
Length = 345
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -2
Query: 296 SFPSLRLYLHLHCFMYT-RW*FNITYFVS*TSNTPSFTGLVNGVHYRYI*RFSLPEHFI 123
SF L+ +++HC +T W N+ +F+ PS +NG+ YI L + ++
Sbjct: 45 SFGLLKWIIYVHCICFTCEWLGNV-FFIDVYDFQPSVFVKINGILKNYIHPIQLYQAYV 102
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,177,833
Number of Sequences: 27780
Number of extensions: 286539
Number of successful extensions: 859
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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