Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0354
         (732 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.2  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   5.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   6.8  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   9.0  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   9.0  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 373  SILDWRFPSATLMSAARTPSDSSMAARFRLSASTC 269
            S++  R+ S T  SA    + SSM A   L+A+TC
Sbjct: 916  SMMPTRY-STTKSSAVTATNASSMIAPVALTAATC 949


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 63  IQDLLHHMKLNKDQSRAEFLQ 1
           I +LL HM L  D S A+F Q
Sbjct: 337 IHELLGHMPLLADPSFAQFSQ 357


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 9   IRHEIDPYLASYGV 50
           I H  DP LA YGV
Sbjct: 578 INHSCDPNLAVYGV 591


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/52 (21%), Positives = 25/52 (48%)
 Frame = -3

Query: 319 PSDSSMAARFRLSASTCICIASCTRVGSLTSRISYLKQVIPQASLALLMACT 164
           PS+    + ++    T I I +   +   + R+    +++ +  +ALL AC+
Sbjct: 364 PSEGEDISDYKFRHITEITILTVQLIVEFSKRLPGFDELMREDQIALLKACS 415


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 694 KSCVSGCVD*ALCAVTVEYIDIA 626
           + CVS   D   C V  +YID A
Sbjct: 97  EQCVSKAADEDECMVARKYIDCA 119


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 694 KSCVSGCVD*ALCAVTVEYIDIA 626
           + CVS   D   C V  +YID A
Sbjct: 97  EQCVSKAADEDECMVARKYIDCA 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,744
Number of Sequences: 438
Number of extensions: 3426
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)