Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0353
         (685 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4CNN3 Cluster: Putative uncharacterized protein; n=1; ...    34   3.7  
UniRef50_Q1JQ55 Cluster: Zgc:136271; n=10; Euteleostomi|Rep: Zgc...    33   4.9  

>UniRef50_A4CNN3 Cluster: Putative uncharacterized protein; n=1;
           Robiginitalea biformata HTCC2501|Rep: Putative
           uncharacterized protein - Robiginitalea biformata
           HTCC2501
          Length = 209

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 19/71 (26%), Positives = 35/71 (49%)
 Frame = +2

Query: 41  VDA*VLPTDTAVCVLIVVLWCTPVRLLVNNIFKQNDCVTEALKICFYHFSWKFVQIILCA 220
           VD  ++  +T V + +++ +  P++ LVN+   Q     E L   F  +S  F  I LC 
Sbjct: 72  VDNWIIAVNT-VLLFVILYYVFPLKSLVNSFMGQERITMEGLSNLFRMYSLGFALIFLCF 130

Query: 221 VVLLSRNFVQL 253
             +  R++ +L
Sbjct: 131 AAMYFRSYKKL 141


>UniRef50_Q1JQ55 Cluster: Zgc:136271; n=10; Euteleostomi|Rep:
           Zgc:136271 - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 764

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 14/62 (22%), Positives = 32/62 (51%)
 Frame = +2

Query: 83  LIVVLWCTPVRLLVNNIFKQNDCVTEALKICFYHFSWKFVQIILCAVVLLSRNFVQLLLA 262
           L ++L   P ++ V N+ K   C T  L  C+  F+W + +  +  + + + N + L++ 
Sbjct: 312 LSLILLMPPEQVKVRNVKKPQGCETRVLLCCYRAFNWYYYKYTVDGINVFAVNLLPLVII 371

Query: 263 SV 268
           ++
Sbjct: 372 TL 373


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 647,746,338
Number of Sequences: 1657284
Number of extensions: 12681504
Number of successful extensions: 23726
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23717
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)