Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0353
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo...    29   0.47 
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.3  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    26   4.4  
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    26   4.4  
SPCC1827.06c |||aspartate semialdehyde dehydrogenase|Schizosacch...    25   7.7  

>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 400

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 164 LKICFYHFSWKFVQIILCAVV-LLSRNFVQLLLASVSWLARTRTISKLF 307
           LK  F +FSWK +Q  L  +V LL  N  +L L     + R R  S LF
Sbjct: 230 LKYVFLYFSWKQLQTSLRNLVPLLDYNNPELYLRRYIQVIRDRAFSLLF 278


>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 602

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 148 LCYRSIKDLFLPFFVEICP 204
           LC +SI+D+FL  F EI P
Sbjct: 216 LCLKSIRDVFLRIFEEIDP 234


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -2

Query: 390 GRSCLTNGGRES--S*RSDDFITEGAQEFKNNLLIVRVRANHETD 262
           G S +  G R S  S   DD ++  AQE      +VR+   ++TD
Sbjct: 575 GNSVIIVGPRGSGKSVLVDDILSRAAQEINEKSYVVRLNGTYQTD 619


>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 333 ITEGAQEFKNNLLIVRVRANHETDASNNCTK 241
           +  G++EF+  +++V+  A H    S NC K
Sbjct: 174 LKNGSEEFRRIMILVQKYAIHNDQVSFNCKK 204


>SPCC1827.06c |||aspartate semialdehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 357

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 72  AVSVGKTHASTVFCKTFLFLIHN 4
           AVSVG+  + ++F   F+ L+HN
Sbjct: 313 AVSVGRIRSDSIFDIKFVSLVHN 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,160
Number of Sequences: 5004
Number of extensions: 56092
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)