Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0353
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1014| Best HMM Match : HEAT (HMM E-Value=0.097)                     30   2.0  
SB_33432| Best HMM Match : 7tm_1 (HMM E-Value=1e-15)                   29   3.5  
SB_8290| Best HMM Match : WD40 (HMM E-Value=2)                         29   4.6  
SB_37974| Best HMM Match : 7tm_1 (HMM E-Value=8.8e-29)                 28   6.1  

>SB_1014| Best HMM Match : HEAT (HMM E-Value=0.097)
          Length = 168

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 209 ILCAVVLLSRNFVQLLLASVSWLARTRTISKLFLN 313
           I  +V+LL   F+ ++L  V W     TISK+F N
Sbjct: 101 IRLSVILLMCTFINVVLIGVVWSIYGETISKIFYN 135


>SB_33432| Best HMM Match : 7tm_1 (HMM E-Value=1e-15)
          Length = 278

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 293 ISKLFLNSWAPSVMKSSDL*ELSRPPLVRHDLPGAFIL 406
           +  +F+ SWAP +  +      SRP L+ H LP A ++
Sbjct: 201 VVSIFILSWAPIIYMTITEYIASRPDLIPHQLPFASLI 238


>SB_8290| Best HMM Match : WD40 (HMM E-Value=2)
          Length = 233

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +1

Query: 220 GRPTESKLCTIVTGIRFVVGPNADYK*IIFKFLGTLRYEVIRPLRTFTAAISQARPA 390
           GR T S  CT V   + V G N     +  + LG L + V++  +TF    S+ + A
Sbjct: 12  GRLTGSVTCTAVDSHKVVSGSNDRTVKVTARLLGRLTFTVVKCDQTFCLFYSRKKKA 68


>SB_37974| Best HMM Match : 7tm_1 (HMM E-Value=8.8e-29)
          Length = 512

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/72 (26%), Positives = 31/72 (43%)
 Frame = +2

Query: 56  LPTDTAVCVLIVVLWCTPVRLLVNNIFKQNDCVTEALKICFYHFSWKFVQIILCAVVLLS 235
           L T T   V I  +W +PV + +  +   +    + + I  + F   FV II+C   +  
Sbjct: 340 LVTKTTALVTIAFIWVSPVLVCLPTVLTGDSYYRQIIVILSFFF--PFVVIIVCYTEITR 397

Query: 236 RNFVQLLLASVS 271
            +  QL   S S
Sbjct: 398 ASHRQLSSISAS 409


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,199,220
Number of Sequences: 59808
Number of extensions: 401366
Number of successful extensions: 921
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)