Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0353
         (685 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL355990-1|CAI18927.1|  727|Homo sapiens solute carrier family 6...    30   6.7  
AL137790-2|CAI18832.1|  727|Homo sapiens solute carrier family 6...    30   6.7  

>AL355990-1|CAI18927.1|  727|Homo sapiens solute carrier family 6,
           member 17 protein.
          Length = 727

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +2

Query: 176 FYHFSWKFVQIILCAVVLLSRNFVQLLLAS---VSWLARTRTISKLFLNSWAPSVM 334
           FY + WKFV   LC  VL + + +QL +      +W+        L+  +WA +++
Sbjct: 567 FYFYMWKFVS-PLCMAVLTTASIIQLGVTPPGYSAWIKEEAAERYLYFPNWAMALL 621


>AL137790-2|CAI18832.1|  727|Homo sapiens solute carrier family 6,
           member 17 protein.
          Length = 727

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +2

Query: 176 FYHFSWKFVQIILCAVVLLSRNFVQLLLAS---VSWLARTRTISKLFLNSWAPSVM 334
           FY + WKFV   LC  VL + + +QL +      +W+        L+  +WA +++
Sbjct: 567 FYFYMWKFVS-PLCMAVLTTASIIQLGVTPPGYSAWIKEEAAERYLYFPNWAMALL 621


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,654,949
Number of Sequences: 237096
Number of extensions: 1753076
Number of successful extensions: 2611
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2611
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)