Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0353
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80029-16|AAB37595.2|  330|Caenorhabditis elegans Serpentine rec...    29   2.3  
Z78414-2|CAB01668.3|  308|Caenorhabditis elegans Hypothetical pr...    29   4.1  

>U80029-16|AAB37595.2|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 21 protein.
          Length = 330

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +1

Query: 451 KSDKLRLF-INITIIC-IHIKY*YVQVCSLIFLISCDLFNYFV 573
           KS   RLF IN+TII  +H+   ++   S I L   DL+NY V
Sbjct: 47  KSRNARLFHINVTIIFQVHLFGFFIHFFSRIILHGLDLYNYAV 89


>Z78414-2|CAB01668.3|  308|Caenorhabditis elegans Hypothetical
           protein W09D12.2 protein.
          Length = 308

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 182 HFSWKFVQIILCAVVLLSRNFVQLLLASVSWL 277
           HF  K  ++I+C  VL+S N + L++ SV ++
Sbjct: 211 HFVQKLTKVIVCNSVLMSGNLLLLVVLSVFYI 242


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,376,193
Number of Sequences: 27780
Number of extensions: 316475
Number of successful extensions: 676
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)