Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0353
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39770.1 68418.m04817 repair endonuclease family protein cont...    28   5.0  
At5g38680.1 68418.m04677 kelch repeat-containing F-box family pr...    27   8.8  

>At5g39770.1 68418.m04817 repair endonuclease family protein
           contains Pfam PF02732 : ERCC4 domain; similar to MUS81
           endonuclease (GI:16755674) [Mus musculus]; similar to
           repair endonuclease (TIGR:At5g41150) [Arabidopsis
           thaliana]
          Length = 1242

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 71  AVCVLIVVLWCTPVRLLVNNIF-KQNDCVTEALKICFYHFSWKFVQIIL 214
           AV  + V+LW T  R+LVN  + K+       L++ +   SW+ + I++
Sbjct: 588 AVLQVAVILWAT-ARMLVNESYDKRRWSAASGLRVFWDWSSWRLLSILI 635


>At5g38680.1 68418.m04677 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 357

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 203 QIILCAVVLLSRNFVQLLLASVSWLARTRTISKLFL 310
           ++I CAV+ L R     +  +V W A   T+ K F+
Sbjct: 313 KMIWCAVITLERRKNSGIWGNVEWFAHVLTVPKTFV 348


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,966,197
Number of Sequences: 28952
Number of extensions: 272570
Number of successful extensions: 524
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)