Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0352
         (681 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q34937 Cluster: MURF2 protein; n=9; Trypanosomatidae|Re...    34   3.7  
UniRef50_Q552M1 Cluster: Putative uncharacterized protein; n=1; ...    33   4.9  

>UniRef50_Q34937 Cluster: MURF2 protein; n=9; Trypanosomatidae|Rep:
           MURF2 protein - Leishmania tarentolae (Sauroleishmania
           tarentolae)
          Length = 355

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 26/84 (30%), Positives = 39/84 (46%)
 Frame = +3

Query: 423 YCWCLPIRVCNVDFF*FLLCLIRCDFKCFDAI*PLLVSNVH*KKKIFIVCNLDGRFNC*F 602
           Y +C  I +  ++FF +LLC I  DF  F      L+S        F + N+     C +
Sbjct: 105 YFFCFSIALYYIEFFTYLLCFIFIDFISFS---NHLIS-------YFGIINMFNVIFCSY 154

Query: 603 RFIDFKCMFYFELRKIFCTATFIL 674
            F    C+FYF +  IFC   F++
Sbjct: 155 LF----CLFYFIICFIFCFIFFVI 174


>UniRef50_Q552M1 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 400

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -3

Query: 157 NKAAYSLFSKNTIKKQWTDDVN--LSQNYYYKIRIKKFYS 44
           NK A  L+ K  + K+WTDD++  L + YY    I+K  S
Sbjct: 27  NKLAVELYEKEPVFKKWTDDIDNILKEKYYGYSMIEKLKS 66


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 540,477,930
Number of Sequences: 1657284
Number of extensions: 9640830
Number of successful extensions: 14790
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14787
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52892566912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)