Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0352
         (681 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036703-4|AAB88555.1|  261|Caenorhabditis elegans Hypothetical ...    26   6.5  
Z81100-1|CAB03194.1|  331|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AF036703-4|AAB88555.1|  261|Caenorhabditis elegans Hypothetical
           protein T11F8.1 protein.
          Length = 261

 Score = 25.8 bits (54), Expect(2) = 6.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 154 YLYNFLHRSVRIIR*YKKFIGIFVSCF 234
           Y + FLH  ++I + + KFI  F  CF
Sbjct: 229 YFWQFLHLKIKISKTFYKFIQFF-KCF 254



 Score = 20.6 bits (41), Expect(2) = 6.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 352 FCSFLKCIFFS 384
           F  F KC FFS
Sbjct: 247 FIQFFKCFFFS 257


>Z81100-1|CAB03194.1|  331|Caenorhabditis elegans Hypothetical
           protein K08G2.7 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 588 IAHLNYKR*IFFFFNEH*KLIM 523
           + HLNY+  ++FFF EH  LI+
Sbjct: 177 LKHLNYQIDMYFFFGEHIFLIL 198


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,063,340
Number of Sequences: 27780
Number of extensions: 246313
Number of successful extensions: 365
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)