Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0351
         (733 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1; ...    73   7e-12
UniRef50_A7I0C4 Cluster: Putative membrane protein; n=1; Campylo...    36   1.0  
UniRef50_Q86QT4 Cluster: Putative uncharacterized protein; n=1; ...    34   4.1  
UniRef50_Q98PK3 Cluster: DNA POLYMERASE III, ALPHA CHAIN; n=1; M...    33   5.5  
UniRef50_Q22S05 Cluster: Ubiquitin-conjugating enzyme family pro...    33   5.5  
UniRef50_O53036 Cluster: HmcD; n=2; Pasteurellaceae|Rep: HmcD - ...    33   9.5  

>UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 77

 Score = 72.9 bits (171), Expect = 7e-12
 Identities = 38/51 (74%), Positives = 39/51 (76%)
 Frame = +3

Query: 162 LFIK*LADPADFVVPQSINKIPMLLYKINLKQTKEIDPTGDTSKEKDIVIF 314
           LF+  LADPADFVVPQSINK P  LYKINLKQTK I  TGDTSKEK    F
Sbjct: 17  LFMIILADPADFVVPQSINKRPKHLYKINLKQTKGIRQTGDTSKEKQNCYF 67


>UniRef50_A7I0C4 Cluster: Putative membrane protein; n=1;
           Campylobacter hominis ATCC BAA-381|Rep: Putative
           membrane protein - Campylobacter hominis (strain ATCC
           BAA-381 / LMG 19568 / NCTC 13146 /CH001A)
          Length = 234

 Score = 35.9 bits (79), Expect = 1.0
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +1

Query: 568 NTYLINFRNDFDDIGV**HHHSLALPYFSVIYHFFAHSPLTHIVFHAIHPFLF 726
           + Y +N + DF   G       LA+   S++ +FF  SPL HI+  AI  F+F
Sbjct: 135 SVYAMNTKTDFSSWGKVLFFALLAIIVVSLLNYFFFSSPLIHIIVSAIAAFVF 187


>UniRef50_Q86QT4 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 47

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 19/28 (67%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = -3

Query: 422 VNLENG*TDLANFGLELFVE-REGSKGR 342
           + LENG TDLANFGLEL VE + G K R
Sbjct: 20  LKLENGWTDLANFGLELPVEVQRGLKVR 47


>UniRef50_Q98PK3 Cluster: DNA POLYMERASE III, ALPHA CHAIN; n=1;
           Mycoplasma pulmonis|Rep: DNA POLYMERASE III, ALPHA CHAIN
           - Mycoplasma pulmonis
          Length = 981

 Score = 33.5 bits (73), Expect = 5.5
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
 Frame = -1

Query: 394 WLILVLNYLWKEKVQKVDKYENARNSIKITMSFSFDVSPVGSISF--VCFKFILYKSIGI 221
           +L+ +L   W EK  K+ KY+NA+  IK  +S    +S +G   +  + +  I +     
Sbjct: 230 FLVKILKESWHEKSHKLQKYDNAKQRIKYELSV---ISKLGFEDYFLIIWDIINWAKKNK 286

Query: 220 LFID*GTTKSAGS-ASYFIN 164
           + I  G   ++GS  SY +N
Sbjct: 287 IAIGPGRGSASGSLVSYLLN 306


>UniRef50_Q22S05 Cluster: Ubiquitin-conjugating enzyme family
           protein; n=1; Tetrahymena thermophila SB210|Rep:
           Ubiquitin-conjugating enzyme family protein -
           Tetrahymena thermophila SB210
          Length = 464

 Score = 33.5 bits (73), Expect = 5.5
 Identities = 17/44 (38%), Positives = 28/44 (63%)
 Frame = -2

Query: 165 ISKHSLYLFFIVEKERKNVFNYTFTIRRHVTYVQYNTTVNRASR 34
           ISKHS ++F+  E  +K VF  +  +++H+   Q+N  VN+A R
Sbjct: 107 ISKHS-HVFY-TEILQKEVFKLSSKLKKHINVGQFNRNVNQAKR 148


>UniRef50_O53036 Cluster: HmcD; n=2; Pasteurellaceae|Rep: HmcD -
           Haemophilus influenzae
          Length = 297

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = -1

Query: 454 TSLYIKMNCCSLISRTVEPIWLILVLNYLWKEKVQKVDKYENARNSIKITMSFSFDVSPV 275
           TS +       +I +T++PI L L     +  K++K ++Y    N I I     F V+P 
Sbjct: 169 TSFFKNFYLDYIIDKTIDPIVLSLKTGLKYYSKIKKYNQYFKPSNVINIKPRVDFLVNPQ 228

Query: 274 GSIS 263
            SIS
Sbjct: 229 ISIS 232


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 690,575,020
Number of Sequences: 1657284
Number of extensions: 13917583
Number of successful extensions: 31671
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 30381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31667
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59265488880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)