Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0351
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    27   3.6  
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe...    26   4.8  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     26   4.8  
SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1...    26   6.4  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.4  

>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = -2

Query: 162 SKHSLYLFFIVEKERKNVFNYTFTIRRHVT---YVQYNTTVNRASRNLDLPSCR 10
           S+  LYL++ V K   N+ +Y   +   +T   Y+ YN+ +++A     +PSCR
Sbjct: 835 SRFGLYLYYDVVK---NMIDYRKDLIVSMTLTFYILYNSIMSKAPIPYFVPSCR 885


>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +3

Query: 195 FVVPQSINKIPMLLYKINLKQTKEID 272
           F+ P +I  IP++  +++ +QTK +D
Sbjct: 459 FLSPWNIKNIPLVTPEVSTRQTKNVD 484


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +3

Query: 627 SFSCPSILLCHIPFLRSLPSYTYRLSRYPSI 719
           +F+ P +L+C   +++S P + Y  + +P+I
Sbjct: 489 AFNIPFLLICIFFYIQSSPPFYYGYALFPTI 519


>SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 318

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 639 PSILLCHIPFLRSLPSYTYRLSRYPSISI 725
           P+IL C I  LR+ P +T +   Y   S+
Sbjct: 64  PAILACSIALLRAFPPFTKKFRFYVGHSL 92


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 84  RHVTYVQYNTTVNRASRNLDLPSCRFL 4
           +H+ Y   NT VNR  +N+  PS   L
Sbjct: 606 QHIQYSYPNTFVNRFPQNIHHPSANLL 632


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,051,791
Number of Sequences: 5004
Number of extensions: 66070
Number of successful extensions: 192
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)