Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0351
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1320 - 35693575-35694846                                         31   0.94 
03_05_0902 + 28643395-28643708,28643830-28643921,28644342-286444...    29   5.0  

>02_05_1320 - 35693575-35694846
          Length = 423

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 16/42 (38%), Positives = 27/42 (64%)
 Frame = -2

Query: 297 FPLMCPPSDRFLLFVLSLFYTKA*VFYLSIEALRSLPGQLVI 172
           F ++ PPSDR L  +LS ++    ++  +I+A R+LP +L I
Sbjct: 138 FRIVTPPSDRALSALLSAYHDNR-LYDRAIQAFRTLPAELGI 178


>03_05_0902 +
           28643395-28643708,28643830-28643921,28644342-28644443,
           28645135-28645185,28645267-28645328,28645664-28645754,
           28645911-28645975,28646053-28646247,28646346-28646465,
           28646630-28646700,28646839-28647064,28647474-28647524,
           28647629-28647857,28648140-28648279,28648527-28648652
          Length = 644

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
 Frame = +1

Query: 265 KSIRRGTHQRKKTLLFLLNSE------HFHIYLPFEPSLSTNNSRPKLAKSVQPFSRLTN 426
           +S+ R     +KT++ L+  E       F   LP EP    NN+ P   +      R   
Sbjct: 498 ESLERFREDGRKTVIRLVEMEASYLTVEFFRKLPTEPDKGANNNTPANDRYQDNHLRRIG 557

Query: 427 SNSFLYIEM*C-ILKIFLPK 483
           SN   YI M C  L+  +PK
Sbjct: 558 SNVSSYINMVCETLRNTIPK 577


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,190,914
Number of Sequences: 37544
Number of extensions: 326966
Number of successful extensions: 655
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)