Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0351
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81131-3|CAB03424.1|  438|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AL032630-11|CAA21570.1|  296|Caenorhabditis elegans Hypothetical...    28   7.8  

>Z81131-3|CAB03424.1|  438|Caenorhabditis elegans Hypothetical
           protein T24D1.4 protein.
          Length = 438

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/72 (22%), Positives = 34/72 (47%)
 Frame = -1

Query: 424 SLISRTVEPIWLILVLNYLWKEKVQKVDKYENARNSIKITMSFSFDVSPVGSISFVCFKF 245
           S+++R    IW  +   Y +     ++DK  +   ++KI +S +F + P  +++     F
Sbjct: 181 SILTRQTNIIWAAI---YAFSVIASRIDKSRSKMENLKIIISTAFSLWPFITLAIGFAMF 237

Query: 244 ILYKSIGILFID 209
           I +    I+  D
Sbjct: 238 IYFNDFQIVLGD 249


>AL032630-11|CAA21570.1|  296|Caenorhabditis elegans Hypothetical
           protein Y62H9A.11 protein.
          Length = 296

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = +2

Query: 482 SYRGLVDKKLVYLYRTMLC--PYSNS 553
           SY G++ K L++ +RT LC  PY+ S
Sbjct: 21  SYSGILFKLLIFYFRTYLCNMPYNKS 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,408,598
Number of Sequences: 27780
Number of extensions: 352579
Number of successful extensions: 808
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)